Alternatives and similar repositories for hyperopt:

Users that are interested in hyperopt are comparing it to the libraries listed below

• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated last year
• iRNA-COSI / APAeval
  Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…
  ☆13Updated last year
• COMBINE-lab / pyroe
  ☆16Updated 2 months ago
• InscriptaLabs / BioCantor
  ☆21Updated last year
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 3 years ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated 3 months ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 9 months ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated last month
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 6 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆20Updated last month
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated last month
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆17Updated last year
• seqeralabs / seqera-kit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆28Updated this week
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated last year
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last month
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆35Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated this week
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 8 months ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated 10 months ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆34Updated 2 months ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 4 years ago
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆33Updated 2 months ago