nextflow-io / hyperoptLinks
Nextflow pipeline for hyperparameter optimization of machine learning models
☆24Updated last year
Alternatives and similar repositories for hyperopt
Users that are interested in hyperopt are comparing it to the libraries listed below
Sorting:
- Builds a PEP from SRA or GEO accessions☆53Updated 3 months ago
- Python Primer Design Library☆14Updated last month
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Universal RObust Peak Annotator☆16Updated last year
- script + metadata = standalone component☆43Updated 3 weeks ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- Bam to Pandas DataFrame, quickly☆13Updated 5 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Nextflow plugin implementation skeleton☆11Updated 2 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A job submitter for Portable Encapsulated Projects☆23Updated 3 weeks ago
- ☆16Updated 9 months ago
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 8 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆29Updated last month
- ☆17Updated 2 months ago
- A python package for showing JBrowse views☆26Updated last year
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated 3 weeks ago
- A rust framework to make using alevin-fry even simpler☆58Updated 6 months ago
- Customer workshop materials☆18Updated 2 years ago
- Python wrapper around Nextflow.☆60Updated this week
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Project metadata manager for PEPs in Python☆38Updated this week
- Gene Fusion Visualiser☆51Updated 2 years ago
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆38Updated 6 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago