nextflow-io / hyperopt
Nextflow pipeline for hyperparameter optimization of machine learning models
☆19Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for hyperopt
- ☆14Updated 2 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆13Updated 10 months ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated last year
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆22Updated last month
- The command-line interface to GGD☆42Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆54Updated last month
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- A python package for showing JBrowse views☆23Updated 10 months ago
- SQL support plugin for Nextflow☆26Updated 2 weeks ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 4 months ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- A cookiecutter template for Snakemake workflows☆57Updated 2 years ago
- Universal RObust Peak Annotator☆15Updated 11 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- A tool to annotate human VCF files with PolyPhen2 effect measures☆9Updated last year
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆18Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆63Updated 5 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- Annotating principal splice isoforms☆14Updated last month
- This BLENDER has been sunsetted☆16Updated last month
- Predict mutated T-cell epitopes from sequencing data☆27Updated 6 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 3 years ago
- ☆15Updated 9 months ago
- Access nextflow variables from python scripts or notebooks☆21Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆19Updated 3 years ago