Alternatives and similar repositories for hyperopt

Users that are interested in hyperopt are comparing it to the libraries listed below

• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆21Updated last year
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 8 months ago
• iRNA-COSI / APAeval
  Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…
  ☆13Updated last year
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• cubimedrub / macworp
  Online platform to host your (Nextflow, Snakemake, ...) workflows with integrated result rendering.
  ☆18Updated 2 weeks ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆68Updated 3 months ago
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆19Updated this week
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 7 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 4 years ago
• refgenie / refgenieserver
  Serves a web interface and RESTful API for reference genome assets.
  ☆12Updated 3 years ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆54Updated last month
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• pachterlab / fastQpick
  ☆26Updated 4 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆38Updated last year
• JaneliaSciComp / nextflow-spark
  ☆15Updated 2 months ago
• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆10Updated last month
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• openvax / topiary
  Predict mutated T-cell epitopes from sequencing data
  ☆30Updated 4 months ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆13Updated 3 years ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 11 months ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• hbctraining / Intro-to-peak-analysis
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
  ☆24Updated 2 months ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆20Updated 4 years ago
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated 2 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆26Updated last month
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆29Updated 6 years ago
• nf-core / setup-nextflow
  A GitHub action to install Nextflow
  ☆19Updated last week