GryderArt / AQuA-HiChIP
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
☆11Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for AQuA-HiChIP
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- ☆14Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- BAGEL software☆26Updated 9 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- chia pet analysis software☆25Updated 5 years ago
- A tool to assess the quality and distribution of genomic data☆16Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Repository for the Anczukow-Lab splicing pipeline☆14Updated last month
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆42Updated last year
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆18Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆27Updated 9 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- ☆16Updated 9 months ago