Alternatives and similar repositories for nextflow-mode:

Users that are interested in nextflow-mode are comparing it to the libraries listed below

• kyleam / snakemake-mode
  [MIRROR] Emacs support for Snakemake
  ☆35Updated 2 months ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 7 years ago
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆31Updated 2 months ago
• fulcrumgenomics / prymer
  Python Primer Design Library
  ☆12Updated 2 weeks ago
• snakemake-workflows / ngs-test-data
  A workflow for creating small NGS test data sets, useful for continuous integration.
  ☆22Updated 8 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆37Updated 2 weeks ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆36Updated last year
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 8 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 4 years ago
• mpieva / mapAD
  An aDNA aware short-read mapper
  ☆19Updated this week
• kloetzl / pfasta
  A Pedantic FASTA Parser and Tool Set
  ☆14Updated 5 years ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 5 months ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 8 months ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated last year
• iqbal-lab-org / clockwork
  CRyPTIC data processing pipelines
  ☆33Updated 9 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 5 months ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated last month
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆50Updated 4 months ago
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆40Updated 3 weeks ago
• bcgsc / xmatchview
  🗻 Visualization of genome/gene sequence synteny
  ☆38Updated last year
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆44Updated 4 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆58Updated 2 weeks ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆18Updated 5 years ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆26Updated last week
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 4 months ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆49Updated last year