edmundmiller / nextflow-modeLinks
Emacs major mode for Nextflow
☆23Updated 11 months ago
Alternatives and similar repositories for nextflow-mode
Users that are interested in nextflow-mode are comparing it to the libraries listed below
Sorting:
- [MIRROR] Emacs support for Snakemake☆35Updated 11 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Updated 10 years ago
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Model files for Sentieon variant callers☆16Updated this week
- A workflow for creating small NGS test data sets, useful for continuous integration.☆24Updated last year
- A collection of modules and sub-workflows for Nextflow☆28Updated 2 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆92Updated 5 months ago
- Infer a tree sequence from genetic variation data.☆60Updated 2 months ago
- Response to blog post about Salmon☆37Updated 8 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Updated 3 years ago
- Example Nextflow pipelines and programming techniques☆106Updated 3 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated 3 weeks ago
- A VSCode extension pack for nf-core developers.☆15Updated 10 months ago
- Grep for FASTQ files☆103Updated 3 weeks ago
- Demultiplexing pipeline for sequencing data☆52Updated 2 weeks ago
- Python Primer Design Library☆14Updated last month
- Simple bacterial assembly and annotation pipeline☆80Updated last month
- fastest GTF/GFF-to-BED converter chilling around☆30Updated this week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 7 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆49Updated last month
- CRyPTIC data processing pipelines☆34Updated last year
- A simple Snakemake profile for Slurm without --cluster-config☆165Updated last year
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 2 weeks ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A GitHub action to install Nextflow☆23Updated this week
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆25Updated 3 weeks ago