Alternatives and similar repositories for nextflow-mode:

Users that are interested in nextflow-mode are comparing it to the libraries listed below

• kyleam / snakemake-mode
  [MIRROR] Emacs support for Snakemake
  ☆34Updated last month
• chapmanb / bcbio.variation
  Toolkit to analyze genomic variation data, built on the GATK with Clojure
  ☆66Updated 9 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆29Updated 2 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆35Updated last year
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 8 months ago
• fulcrumgenomics / prymer
  Python Primer Design Library
  ☆12Updated last week
• smaegol / nanotail
  R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
  ☆10Updated 9 months ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆50Updated 4 months ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆22Updated this week
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆65Updated 2 months ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• iqbal-lab-org / clockwork
  CRyPTIC data processing pipelines
  ☆32Updated 8 months ago
• mpieva / mapAD
  An aDNA aware short-read mapper
  ☆19Updated last week
• bioinfologics / w2rap-contigger
  An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
  ☆45Updated 2 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆74Updated 2 weeks ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 7 years ago
• rrwick / Bacterial-genome-assemblies-with-multiplex-MinION-sequencing
  ☆33Updated 7 years ago
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆40Updated this week
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆18Updated 5 years ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• peterk87 / sublime-nextflow
  Nextflow workflow syntax highlighting and snippets for Sublime Text 4
  ☆24Updated 2 months ago
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆60Updated 5 years ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated 2 weeks ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆25Updated 2 months ago
• andreas-wilm / lofreq3
  LoFreq Version 3
  ☆27Updated 4 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago