qbic-pipelines / cellrangerLinks
Nextflow pipeline wrapper for executing Cell Ranger
☆12Updated 3 years ago
Alternatives and similar repositories for cellranger
Users that are interested in cellranger are comparing it to the libraries listed below
Sorting:
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Find hot data sets in your area (of research)!☆16Updated 6 years ago
- interactive plots for differential expression analysis☆33Updated last month
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆20Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- UMCU Genetics Nextflow modules☆28Updated 9 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 9 months ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 4 months ago
- Data Science Operations (dso) command line tool☆41Updated this week
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- supplementary tables and files☆10Updated last year
- ☆17Updated last year
- Workflow management with Nextflow and nf-core☆24Updated 6 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Nascent Transcription Processing Pipeline☆20Updated 3 weeks ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 2 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year