Nextflow pipeline wrapper for executing Cell Ranger
☆12Mar 8, 2022Updated 4 years ago
Alternatives and similar repositories for cellranger
Users that are interested in cellranger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Differential gene expression analysis and pathway analysis of RNAseq data☆31Jul 3, 2025Updated last year
- A cloud-based deployment of the 10x Genomics Cell Ranger software☆14Jul 7, 2019Updated 7 years ago
- FunctionaL Omics Processing platform☆12Jul 25, 2024Updated 2 years ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jul 28, 2026Updated 2 months ago
- load an image from lif file as a numpy array☆10Jun 2, 2022Updated 4 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Demultiplexing pipeline for sequencing data☆61Updated this week
- Gene network analysis☆22Dec 2, 2022Updated 3 years ago
- Feature extraction algorithm for genomic data☆15Sep 28, 2021Updated 5 years ago
- SQL support plugin for Nextflow☆32Aug 10, 2026Updated 2 months ago
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Apr 13, 2026Updated 6 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆57Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Isoform-level spatial transcriptomics analysis☆18May 3, 2026Updated 5 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Read HOMER motif analysis output in R.☆18Mar 1, 2018Updated 8 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Jun 9, 2020Updated 6 years ago
- Workflow management with Nextflow and nf-core☆32Jan 21, 2025Updated last year
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- Customer workshop materials☆19May 13, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Information for the Intro to Cluster System Administration for Non-Sysadmins class☆10Dec 12, 2021Updated 4 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- TFFM framework☆13Sep 22, 2025Updated last year
- Simple wrapper around docker-machine tool for creating and managing cloud instances across many providers☆10Sep 5, 2017Updated 9 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- Fitting dose-response models in R☆29Updated this week
- ☆12Mar 29, 2025Updated last year
- Contains sample scripts and code to be used with LabKey Server☆12Jun 24, 2026Updated 3 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Visit ~andersonvom☆12Dec 28, 2020Updated 5 years ago
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆24Nov 18, 2024Updated last year
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆50Updated this week
- 16S pipeline using qiime2 created with snakemake☆12Sep 15, 2026Updated 3 weeks ago
- Pan-genome Analysis☆14May 4, 2025Updated last year
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago