Alternatives and similar repositories for nat.nblast

Users that are interested in nat.nblast are comparing it to the libraries listed below

• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆55Updated last year
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆108Updated 11 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆93Updated 4 years ago
• morphonets / SNT
  The framework for quantification of neuronal anatomy
  ☆55Updated this week
• AllenInstitute / patchseqtools
  QC and cell type assignment for patch-seq transcriptomics data
  ☆24Updated last year
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆172Updated this week
• nel-lab / FIOLA
  ☆34Updated 8 months ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆82Updated this week
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆17Updated 10 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated 3 weeks ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆144Updated last week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆39Updated last year
• AllenInstitute / AllenSDK
  code for reading and processing Allen Institute for Brain Science data
  ☆374Updated 2 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆39Updated 2 years ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆53Updated 8 months ago
• BlueBrain / eFEL
  Electrophys Feature Extraction Library
  ☆77Updated 11 months ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆224Updated last week
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆31Updated 2 years ago
• AllenInstitute / ipfx
  computes intrinsic cell features from intracellular electrophysiology data
  ☆28Updated 2 months ago
• swharden / pyABF
  pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
  ☆115Updated last year
• gordonberman / MotionMapper
  Sample implementation of the MotionMapper behavioral analysis algorithms
  ☆82Updated 5 years ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• AllenInstitute / neuroglia
  a Python machine learning library for neurophysiology data
  ☆36Updated 7 years ago
• project-improv / improv
  Adaptive Platform for Neuroscience Experiments
  ☆43Updated 2 months ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆35Updated last week
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆114Updated 5 months ago
• dervinism / minis
  'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…
  ☆11Updated last year