DeepLabCut / napari-deeplabcutLinks
a napari plugin for labeling and refining keypoint data within DeepLabCut projects
☆60Updated 3 months ago
Alternatives and similar repositories for napari-deeplabcut
Users that are interested in napari-deeplabcut are comparing it to the libraries listed below
Sorting:
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆111Updated 2 months ago
- Quantify user-defined behaviors.☆101Updated 2 weeks ago
- Anatomical space conventions made easy.☆12Updated 3 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 3 weeks ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆109Updated 4 months ago
- Brainways☆22Updated 4 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆65Updated 6 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated 3 weeks ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆22Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 3 years ago
- ☆12Updated last year
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆52Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- ☆52Updated last year
- ☆18Updated 3 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 9 months ago
- a module for kinematic analysis of deeplabcut outputs☆148Updated 2 years ago
- ☆101Updated 2 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- ☆34Updated 7 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 3 weeks ago
- ☆46Updated 5 years ago
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆47Updated last month
- Automated 3D cell detection in very large images☆222Updated 2 weeks ago