DeepLabCut / napari-deeplabcut
a napari plugin for labeling and refining keypoint data within DeepLabCut projects
☆54Updated 2 weeks ago
Alternatives and similar repositories for napari-deeplabcut:
Users that are interested in napari-deeplabcut are comparing it to the libraries listed below
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆75Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 3 months ago
- ☆83Updated 2 months ago
- Quantify user-defined behaviors.☆74Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated this week
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆34Updated this week
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆28Updated 8 months ago
- Tools for machine learning of animal behavior☆13Updated 10 months ago
- ☆19Updated 11 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆55Updated 8 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆89Updated 2 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆62Updated 3 months ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- ☆32Updated last year
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆13Updated 2 years ago
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆17Updated 3 months ago
- Code package that allows meta analyses of unsupervised behavior results☆16Updated 5 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- ☆51Updated 5 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆21Updated this week
- Brainways☆14Updated 2 weeks ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 8 months ago
- Histology processing☆65Updated 10 months ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆47Updated 9 months ago
- ☆18Updated 2 years ago
- Demo code for CAPTURE and DANNCE☆27Updated 3 years ago