DeepLabCut / napari-deeplabcutLinks
a napari plugin for labeling and refining keypoint data within DeepLabCut projects
☆60Updated this week
Alternatives and similar repositories for napari-deeplabcut
Users that are interested in napari-deeplabcut are comparing it to the libraries listed below
Sorting:
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆114Updated 4 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- Quantify user-defined behaviors.☆103Updated 2 weeks ago
- Brainways☆22Updated 5 months ago
- Anatomical space conventions made easy.☆12Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆66Updated 7 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated this week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- ☆46Updated 5 years ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆25Updated this week
- ☆103Updated 3 months ago
- ☆52Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- ☆34Updated 8 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated this week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆18Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆52Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Automated 3D cell detection in very large images☆223Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆55Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆34Updated last month