DeepLabCut / napari-deeplabcutLinks
a napari plugin for labeling and refining keypoint data within DeepLabCut projects
☆60Updated last month
Alternatives and similar repositories for napari-deeplabcut
Users that are interested in napari-deeplabcut are comparing it to the libraries listed below
Sorting:
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆106Updated last month
- Brainways☆21Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 3 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆63Updated 5 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- Anatomical space conventions made easy.☆11Updated 2 weeks ago
- Quantify user-defined behaviors.☆98Updated 3 weeks ago
- ☆34Updated 6 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- ☆97Updated 3 weeks ago
- ☆52Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- ☆45Updated 5 years ago
- Fiber Photometry Modular Analysis Tool Suite☆41Updated 4 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 2 weeks ago
- Automated 3D cell detection in very large images☆219Updated 2 weeks ago
- ☆19Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 9 months ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 2 weeks ago
- ☆11Updated last year
- Mix-and-match computer vision tools for your animal behaviour analysis☆20Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Calcium imaging inter-session alignment☆13Updated 3 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year