AllenInstitute / ipfxLinks
computes intrinsic cell features from intracellular electrophysiology data
☆28Updated last month
Alternatives and similar repositories for ipfx
Users that are interested in ipfx are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55Updated last year
- QC and cell type assignment for patch-seq transcriptomics data☆24Updated last year
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- Data format specification schema for the NWB neurophysiology data format☆61Updated last week
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Histology processing☆72Updated last month
- ☆34Updated 8 months ago
- Browser-based NWB visualization and DANDI exploration☆62Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- COmmon COordinate FRAMEwork in R☆38Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated this week
- A Python interface to access neuroanatomical atlases☆172Updated this week
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Updated 4 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- ☆52Updated last year
- pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files☆115Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆34Updated last month
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆39Updated 2 years ago
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆27Updated 5 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated this week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- ☆20Updated 7 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year