brainglobe / cellfinder-napariLinks
Efficient cell detection in large images using cellfinder in napari
☆23Updated last year
Alternatives and similar repositories for cellfinder-napari
Users that are interested in cellfinder-napari are comparing it to the libraries listed below
Sorting:
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated this week
- Visualise brainreg registration output☆10Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Loading and saving of image data.☆10Updated last year
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated this week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- Anatomical space conventions made easy.☆10Updated last month
- Brainways☆18Updated 2 weeks ago
- ☆18Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 7 months ago
- Build unbiased anatomical templates from individual images☆11Updated last week
- ☆45Updated 5 years ago
- GPU-based 3D non-rigid volumetric registration☆32Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 months ago
- Process images using SimpleITK in napari☆21Updated last month
- ☆23Updated 3 weeks ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- ilastik plugin for napari☆14Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆17Updated last month
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 6 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ABBA, controlled from python☆13Updated 2 months ago
- ☆25Updated last month