Efficient cell detection in large images using cellfinder in napari
☆22Jan 5, 2024Updated 2 years ago
Alternatives and similar repositories for cellfinder-napari
Users that are interested in cellfinder-napari are comparing it to the libraries listed below
Sorting:
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated this week
- Build unbiased anatomical templates from individual images☆12Updated this week
- Anatomical space conventions made easy.☆12Feb 20, 2026Updated 2 weeks ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- NIU website on common software problems and their troubleshooting☆10Feb 13, 2026Updated 3 weeks ago
- ☆10Mar 15, 2023Updated 2 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- ☆11Oct 21, 2025Updated 4 months ago
- Re-usable GitHub Action scripts☆14Mar 2, 2026Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆36Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆25Updated this week
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- A Python package to download neuronal morphologies☆18Updated this week
- brainglobe.info website☆14Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆21Dec 16, 2025Updated 2 months ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Dec 11, 2020Updated 5 years ago
- A repository for our participation in Google Summer of Code☆13Apr 15, 2025Updated 10 months ago
- A package to manage electrophysiology analysis.☆22Updated this week
- Fancier logging with python.☆16Updated this week
- Mix-and-match computer vision tools for your animal behaviour analysis☆28Updated this week
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Feb 28, 2026Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Nov 24, 2023Updated 2 years ago
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated this week
- An R toolbox for analysing movement across space and time☆10Jan 16, 2026Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆145Updated this week
- Tool for the creation, validation and transfer of neuroscience project folders.☆34Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆50Updated this week
- Utility to create a basic Python project structure with tests, CI etc.☆36Updated this week
- Automated 3D cell detection in very large images☆224Updated this week
- Behavior Classifier Component from the Jax Animal Behavior System☆20Updated this week
- A Python interface to access neuroanatomical atlases☆175Updated this week
- ☆46May 21, 2020Updated 5 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 3 months ago
- An annotation and instance segmentation-based multi-object tracking and behavior analysis package.☆56Updated this week