brainglobe / cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
☆23Updated last year
Alternatives and similar repositories for cellfinder-napari:
Users that are interested in cellfinder-napari are comparing it to the libraries listed below
- Registration to BrainGlobe atlases in napari using Elastix☆21Updated last week
- Segmentation of anatomical structures in a common coordinate space☆30Updated 2 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated 2 weeks ago
- Visualise brainreg registration output☆10Updated 3 years ago
- Standalone cellfinder cell detection algorithm☆19Updated last year
- ☆45Updated 4 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated last week
- ☆18Updated 2 years ago
- Loading and saving of image data.☆10Updated last year
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- Process images using SimpleITK in napari☆20Updated 5 months ago
- Tools for distributed alignment of massive images☆81Updated last month
- StarDist plugin for napari☆37Updated 6 months ago
- Brainways☆16Updated 2 weeks ago
- ☆23Updated 6 months ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 5 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- ☆24Updated 3 months ago
- ☆18Updated 3 years ago
- ☆17Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last week