sophie63 / FlyLFM
This repository contains code used for the fly brain activity experiments
☆15Updated last year
Related projects: ⓘ
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆21Updated 5 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- ☆9Updated 4 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆12Updated 4 years ago
- IaC codebase for the NeuroCAAS Platform☆34Updated 9 months ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆11Updated this week
- ☆12Updated 7 years ago
- ☆29Updated 11 months ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆24Updated 6 years ago
- A modular package to control stimulation and track behaviour☆42Updated this week
- ☆23Updated 2 months ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆12Updated 5 years ago
- Adaptive Platform for Neuroscience Experiments☆37Updated 2 weeks ago
- The Browsable Atlas of Behavior-Anatomy Maps (BABAM) is a GUI for exploring hypotheses of correlations between neural activity in regions…☆11Updated last year
- ☆19Updated 5 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated last year
- Preprint classes for biological journals☆31Updated 3 years ago
- Pytorch implementation of LocaNMF☆33Updated 4 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆14Updated last year
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆19Updated 6 years ago
- Trend Filter Denoising☆21Updated 3 years ago
- Recordings of 10k neurons during spontaneous behaviors☆49Updated 5 months ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Updated last year
- Fast Exact Spike Inference Via L0 Optimization☆15Updated 4 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆17Updated 2 years ago
- SpikeForest -- spike sorting analysis for website☆16Updated 4 years ago
- Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning☆14Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Updated 4 months ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆12Updated last year
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆29Updated last month