BikLab / BITMaB2-TutorialsLinks
Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpus Christi, TX (January 15-19, 2018)
☆22Updated 7 years ago
Alternatives and similar repositories for BITMaB2-Tutorials
Users that are interested in BITMaB2-Tutorials are comparing it to the libraries listed below
Sorting:
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Course material for the metagenomics course☆46Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Micro 612 genomics workshop☆37Updated 4 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆85Updated 4 months ago
- ☆19Updated 6 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆125Updated 3 weeks ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- ☆40Updated 4 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12Updated 3 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Bioinformatics Tools☆89Updated last month
- ☆23Updated 7 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 7 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆59Updated last year
- Using ggtree to build phylogenetic trees☆50Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- ☆84Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago