BikLab / BITMaB2-TutorialsLinks
Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpus Christi, TX (January 15-19, 2018)
☆22Updated 7 years ago
Alternatives and similar repositories for BITMaB2-Tutorials
Users that are interested in BITMaB2-Tutorials are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- ☆18Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Bioinformatics Tools☆88Updated this week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Microbiome classification pipeline☆66Updated 2 months ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆66Updated 4 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Making whole bacterial genome sequencing data analysis easy☆108Updated 2 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated 6 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- ☆41Updated 4 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆80Updated last week
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆38Updated 2 weeks ago
- gutSMASH☆55Updated 6 months ago
- ☆23Updated 7 years ago
- Rapid and scalable correlation estimation for compositional data☆90Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12Updated 3 years ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆31Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago