Alternatives and similar repositories for learn

Users that are interested in learn are comparing it to the libraries listed below

• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
  ☆106Updated this week
• liulab-dfci / RIMA_pipeline
  ☆86Updated last year
• YutingPKU / SingleCell-Multiomics
  ☆70Updated 3 years ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated 10 months ago
• TheHumphreysLab / plot1cell
  ☆114Updated 5 months ago
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆47Updated last year
• IzarLab / CUIMC-NYP_COVID_autopsy_lung
  ☆45Updated 4 years ago
• WXlab-NJMU / scrna-recom
  collected resource for scRNA-seq analysis
  ☆63Updated 2 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆36Updated 4 years ago
• BioinformaticsFMRP / PanCanStem_Web
  ☆32Updated 3 years ago
• KChen-lab / METAFlux
  ☆69Updated last year
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆61Updated 4 years ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆54Updated last year
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆37Updated 2 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• ShixiangWang / install_GISTIC
  Install GISTIC2 by one line code; GISTIC2 docker image
  ☆42Updated 2 years ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆91Updated 2 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆56Updated 2 years ago
• sjdlabgroup / SAHMI
  ☆84Updated last year
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆35Updated 2 years ago
• xjsun1221 / RSEM_with_limma_edgeR_Deseq2
  ☆37Updated 5 years ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆60Updated 8 months ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated this week
• 123anjuan / HMA
  Human Muscle Ageing Cell Atlas
  ☆20Updated last year
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆111Updated last week
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆51Updated last year
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆65Updated 11 months ago
• sajuukLyu / Protocols-4pub
  Multi-omics analysis protocols by Lyu.
  ☆51Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago