MahnoorNGondal / scRNA-seq-ICB-cohorts
This repository contained single-cell RNA-seq datasets with ICB treated patients
☆9Updated 6 months ago
Alternatives and similar repositories for scRNA-seq-ICB-cohorts:
Users that are interested in scRNA-seq-ICB-cohorts are comparing it to the libraries listed below
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆15Updated 2 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆19Updated 4 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 3 weeks ago
- ☆10Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆21Updated 2 months ago
- ☆24Updated 2 years ago
- ☆29Updated 6 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆13Updated 4 years ago
- Analysis and visualization of RNA-Seq results☆29Updated 4 months ago
- ☆23Updated 2 years ago
- Gene-level general linear mixed model☆21Updated 3 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- A database of useful gene signatures for single-cell analysis☆21Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- ☆13Updated 7 years ago
- BioCarta pathway images☆11Updated last year