MahnoorNGondal / scRNA-seq-ICB-cohortsLinks
This repository contained single-cell RNA-seq datasets with ICB treated patients
☆11Updated 8 months ago
Alternatives and similar repositories for scRNA-seq-ICB-cohorts
Users that are interested in scRNA-seq-ICB-cohorts are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Pseudotime Analysis for Bulk Data☆15Updated 11 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated last month
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆29Updated 7 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Tools for assessing clustering robustness☆25Updated this week
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 6 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 4 months ago
- ☆47Updated 5 years ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 3 weeks ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- The source code of web server TIP, including example data.☆19Updated 6 years ago
- ☆13Updated 7 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆12Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- R package for Bioconductor submission☆35Updated 2 years ago