A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
☆84Oct 22, 2022Updated 3 years ago
Alternatives and similar repositories for LncPipe
Users that are interested in LncPipe are comparing it to the libraries listed below
Sorting:
- An R package for automatically aggregating and summarizing lncRNA analysis results.☆16Mar 5, 2019Updated 7 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated 11 months ago
- A shiny app for TBtools data plot☆29Aug 15, 2016Updated 9 years ago
- Rscripts collection for ploting in daily research life☆10Jan 15, 2021Updated 5 years ago
- Interactive Differential Expression Analyzer☆37Sep 7, 2020Updated 5 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆31Sep 15, 2023Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 weeks ago
- lncRNA-screen☆25Apr 19, 2017Updated 8 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago
- FEELnc : FlExible Extraction of LncRNA☆93Jul 23, 2025Updated 7 months ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 8 years ago
- See the main fork of this repository here >>>☆39Mar 9, 2026Updated last week
- ☆12May 8, 2025Updated 10 months ago
- Scripts for next generation sequencing analyses☆15Nov 6, 2025Updated 4 months ago
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆119Oct 27, 2023Updated 2 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 3 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆21Mar 8, 2026Updated last week
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Aug 22, 2025Updated 7 months ago
- My blog.☆16Aug 8, 2025Updated 7 months ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆31Dec 28, 2017Updated 8 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 6 months ago
- RNAseq analysis pipeline☆27Updated this week
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 3 years ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 7, 2023Updated 2 years ago
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆330Dec 21, 2018Updated 7 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Sequana: a set of Snakemake NGS pipelines☆151Mar 8, 2026Updated last week
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 6 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆172Updated this week