marbl / gingr
☆14Updated last year
Alternatives and similar repositories for gingr:
Users that are interested in gingr are comparing it to the libraries listed below
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 2 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 3 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆18Updated 3 years ago
- Colinear block visualisation tool☆30Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆41Updated last month
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆48Updated 6 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆11Updated 10 months ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆15Updated 6 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 5 years ago
- Recombination-free trees☆56Updated last year
- strain-level analysis tools☆33Updated 2 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Read contamination removal☆24Updated 11 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Detect contigs of complete circular genomes☆22Updated 5 years ago