crarlus / paprbag
Pathogenicity prediction of bacterial genomes
☆17Updated 6 years ago
Alternatives and similar repositories for paprbag:
Users that are interested in paprbag are comparing it to the libraries listed below
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Guide to transcriptome assembly & analysis☆21Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 7 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- A series of scripts to automate sequence workflows☆19Updated 4 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 7 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Nanopore desc☆18Updated 8 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- blast, shmlast☆21Updated 4 years ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- ☆18Updated 9 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 3 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated 2 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago