crarlus / paprbagLinks
Pathogenicity prediction of bacterial genomes
☆17Updated 7 years ago
Alternatives and similar repositories for paprbag
Users that are interested in paprbag are comparing it to the libraries listed below
Sorting:
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- in silico plasmid extraction☆13Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Ebola virus surveillance☆16Updated 9 years ago
- reference free variant assembly☆34Updated 2 years ago
- Very very long reads, indeed☆13Updated 8 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- ☆19Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- ☆27Updated 8 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Nanopore desc☆18Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago