jordanlab / stringMLST
Fast k-mer based tool for multi locus sequence typing (MLST)
☆43Updated 4 years ago
Alternatives and similar repositories for stringMLST:
Users that are interested in stringMLST are comparing it to the libraries listed below
- Split Kmer Analysis☆62Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ☆36Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- IS mapping software☆53Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Gene-flank analysis tool☆27Updated 3 months ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- whole genome MLST analysis☆41Updated last week
- Synteny Imager☆60Updated 6 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 7 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- ☆52Updated 3 years ago
- ☆80Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆46Updated last month
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago