phac-nml / rebar
REcombination BARcode detector.
☆13Updated last year
Alternatives and similar repositories for rebar
Users that are interested in rebar are comparing it to the libraries listed below
Sorting:
- A pipeline for bioinformatics analysis of bacterial genomes☆28Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 2 months ago
- UPHL's Reference Free Pipeline☆26Updated last week
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 7 months ago
- ☆17Updated 2 weeks ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- ☆21Updated 2 months ago
- Genome size estimation from long read overlaps☆55Updated last month
- µbinfie blog☆17Updated 2 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 7 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 3 weeks ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Bacterial surveillance pipeline.☆24Updated this week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Colinear block visualisation tool☆31Updated last year
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last week
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆34Updated last month
- ☆10Updated last month
- Calculate assocations between genes and traits☆23Updated 2 months ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Updated 7 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Order and orientation of complete bacterial genomes☆27Updated last year
- Recombination-free trees☆58Updated last month
- emm Automatic Isolate Labeller☆10Updated last month
- Generation of pan-genome profile files using Roary output.☆9Updated 7 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year