phac-nml / rebarView external linksLinks
REcombination BARcode detector.
☆16Apr 2, 2024Updated last year
Alternatives and similar repositories for rebar
Users that are interested in rebar are comparing it to the libraries listed below
Sorting:
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- A Python package to update the MLST database for the mlst tool.☆18Jan 16, 2026Updated 3 weeks ago
- app to collapse Pango lineages for reporting☆12Dec 9, 2025Updated 2 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 6 months ago
- ☆26Mar 6, 2025Updated 11 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Nov 18, 2025Updated 2 months ago
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated 10 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆35Updated this week
- Population analysis PIPEline 🛠🧬☆22Feb 3, 2026Updated last week
- A simple pipeline for bacterial assembly and quality control☆16Jan 30, 2026Updated 2 weeks ago
- Assembly of Nanopore Sequencing☆17Jan 8, 2026Updated last month
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Oct 22, 2025Updated 3 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Interpretative standards for AMR genotypes☆27Feb 6, 2026Updated last week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 2 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆41Feb 6, 2026Updated last week
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Dec 17, 2025Updated last month
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- ☆11Mar 10, 2024Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆36Oct 29, 2024Updated last year
- IRIDA Next☆12Updated this week
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated 8 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 10 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆59Oct 22, 2025Updated 3 months ago
- snipit: summarise snps relative to your reference sequence☆166Jan 13, 2026Updated last month
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 5 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated last year
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆18Dec 12, 2025Updated 2 months ago
- An powered LLM Slack bot that uses an OpenAI API backend (LlamaCPP, Ollama, etc)☆12Updated this week