phac-nml / rebarLinks
REcombination BARcode detector.
☆16Updated last year
Alternatives and similar repositories for rebar
Users that are interested in rebar are comparing it to the libraries listed below
Sorting:
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Predict MLST directly from uncorrected long reads☆27Updated this week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 3 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- Recombination-free trees☆60Updated 2 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Genome size estimation from long read overlaps☆62Updated last week
- ☆23Updated last week
- UPHL's Reference Free Pipeline☆27Updated 3 weeks ago
- Plasmid analysis using rearrangement distances☆46Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- Colinear block visualisation tool☆31Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 7 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated 2 months ago
- ☆23Updated 7 months ago
- Predict plasmids from uncorrected long read data☆41Updated this week
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Intra-species bacterial contamination detection☆25Updated 8 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Clermont PCR method In-Silico☆23Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago