phac-nml / rebarLinks
REcombination BARcode detector.
☆16Updated last year
Alternatives and similar repositories for rebar
Users that are interested in rebar are comparing it to the libraries listed below
Sorting:
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Fast and space-efficient taxonomic classification of long reads☆43Updated last week
- ☆20Updated last week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last month
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆41Updated 5 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Genome size estimation from long read overlaps☆59Updated this week
- Recombination-free trees☆59Updated 5 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- ☆22Updated 5 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated 2 months ago
- ☆27Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Plasmid analysis using rearrangement distances☆45Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Intra-species bacterial contamination detection☆25Updated 6 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆27Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- CFSAN Shigella Typing Pipeline☆14Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Bacterial GWAS analysis☆43Updated last month