Protein sequence domain annotation with a language model
☆33Apr 21, 2026Updated 2 months ago
Alternatives and similar repositories for PSALM
Users that are interested in PSALM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Just another minhash implementation.☆12May 28, 2026Updated last month
- protein utilities in Rust☆34Jul 7, 2026Updated 2 weeks ago
- Fast sequence distance estimates☆30Jul 1, 2026Updated 2 weeks ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆28Jun 20, 2026Updated last month
- ☆18Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Rank homologous protein sequences based on a regressor trained on experimental measures☆16Apr 11, 2025Updated last year
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 6 months ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆30Jun 9, 2026Updated last month
- ☆13Dec 26, 2025Updated 6 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 6 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆20Jun 23, 2026Updated 3 weeks ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Updated this week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆10Jan 15, 2020Updated 6 years ago
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago
- Discovery of conserved gene clusters in multiple genomes☆135Jan 16, 2026Updated 6 months ago
- ☆11Jul 3, 2022Updated 4 years ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- Protein structure alignment and search algorithm☆84Updated this week
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5