Protobuf and gRPC specifications for the MinKNOW API
☆70Apr 29, 2026Updated last month
Alternatives and similar repositories for minknow_api
Users that are interested in minknow_api are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆197Feb 25, 2026Updated 3 months ago
- Minotour API, web and client code☆30Mar 28, 2026Updated 2 months ago
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 3 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 4 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88May 19, 2026Updated 3 weeks ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 8 months ago
- Pod5: a high performance file format for nanopore reads.☆175Mar 31, 2026Updated 2 months ago
- Nanopore sequence read simulator☆303Mar 12, 2026Updated 2 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆48Apr 30, 2026Updated last month
- Oxford Nanopore's Basecaller☆837May 20, 2026Updated 3 weeks ago
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆112May 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 3 years ago
- a long read simulator that can imitate many types of read problems☆290Apr 22, 2026Updated last month
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆116Nov 20, 2023Updated 2 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- ☆27Nov 14, 2025Updated 6 months ago
- ☆27Dec 29, 2020Updated 5 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 2 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12May 6, 2021Updated 5 years ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 8 months ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- A better, faster way to count guides in CRISPR screens.☆35Apr 30, 2026Updated last month
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- Sequence correction provided by ONT Research☆517May 20, 2026Updated 3 weeks ago