☆33Sep 20, 2017Updated 8 years ago
Alternatives and similar repositories for Bacterial-genome-assemblies-with-multiplex-MinION-sequencing
Users that are interested in Bacterial-genome-assemblies-with-multiplex-MinION-sequencing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 13 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated last year
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Feb 17, 2026Updated last month
- MIRA sequence assembler☆32Jan 2, 2025Updated last year
- ☆11Feb 16, 2021Updated 5 years ago
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- ☆17Apr 1, 2018Updated 7 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Nov 4, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆51Aug 9, 2021Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60May 23, 2019Updated 6 years ago
- ☆23Feb 12, 2026Updated last month
- Quality control for MinION sequencing data☆217Mar 17, 2026Updated last week
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 2 months ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆209Nov 18, 2022Updated 3 years ago
- quality filtering tool for long reads☆396Sep 17, 2025Updated 6 months ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Sep 3, 2020Updated 5 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- HMM-HDP models for MinION signal alignments☆46Apr 10, 2017Updated 8 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- de.NBI Nanopore Training Course☆21Jun 13, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- The ARTIC fieldbioinformatics pipeline☆130Mar 19, 2026Updated last week
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Jan 14, 2026Updated 2 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- S2F: protein function without experiments☆16Nov 24, 2025Updated 4 months ago