mstritt / orbit-image-analysis
A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
☆61Updated 3 years ago
Alternatives and similar repositories for orbit-image-analysis:
Users that are interested in orbit-image-analysis are comparing it to the libraries listed below
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆112Updated this week
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- Bio-Formats image file format to raw format converter☆85Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆80Updated 6 months ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 3 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆108Updated 3 weeks ago
- ☆30Updated 2 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆40Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 3 months ago
- Easily read and write ome-tiff images in python☆26Updated 8 months ago
- ☆21Updated last year
- An open-source digital pathology based rapid image annotation tool☆75Updated this week
- Cloud-based data annotation tools for biological images☆77Updated 11 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Raw format to OME-TIFF converter☆49Updated 2 months ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆35Updated this week
- QuPath extension for Segment Anything Model (SAM)☆94Updated 4 months ago
- ☆61Updated this week
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆29Updated 3 years ago
- Delete the label from a whole-slide image☆62Updated 3 years ago
- A whole-slide image reader for TensorFlow☆23Updated 3 months ago
- A Girder plugin for pathology image annotations and analysis.☆58Updated this week
- StarDist plugin for ImageJ☆27Updated 2 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated 2 years ago
- ☆68Updated last month
- ☆24Updated 4 months ago