mstritt / orbit-image-analysisLinks
A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
☆60Updated 4 years ago
Alternatives and similar repositories for orbit-image-analysis
Users that are interested in orbit-image-analysis are comparing it to the libraries listed below
Sorting:
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆121Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- Bio-Formats image file format to raw format converter☆92Updated last week
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Read and write life sciences file formats☆140Updated 8 months ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 4 years ago
- Raw format to OME-TIFF converter☆53Updated last week
- ☆23Updated 2 years ago
- ☆22Updated 2 years ago
- ☆32Updated 2 years ago
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 5 months ago
- multimodal whole slide image registration in a graph structure☆85Updated 11 months ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- An open-source digital pathology based rapid image annotation tool☆77Updated 3 weeks ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆29Updated last year
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- ☆25Updated 4 years ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- ☆31Updated 4 years ago
- A Girder plugin for pathology image annotations and analysis.☆70Updated last week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- Python image segmentation plugin☆31Updated 4 years ago
- Easily read and write ome-tiff images in python☆27Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago