mstritt / orbit-image-analysis
A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
☆60Updated 3 years ago
Alternatives and similar repositories for orbit-image-analysis:
Users that are interested in orbit-image-analysis are comparing it to the libraries listed below
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆117Updated this week
- Delete the label from a whole-slide image☆63Updated 4 years ago
- An open-source digital pathology based rapid image annotation tool☆76Updated this week
- A Girder plugin for pathology image annotations and analysis.☆67Updated this week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- multimodal whole slide image registration in a graph structure☆81Updated 8 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆113Updated 3 months ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 3 years ago
- ☆31Updated 2 years ago
- Python library for converting WSI files to DICOM☆70Updated last week
- ⚡ Open-source software for deep learning-based digital pathology☆131Updated 9 months ago
- Bio-Formats image file format to raw format converter☆86Updated last week
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 3 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆77Updated last year
- Cloud-based data annotation tools for biological images☆78Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆35Updated 3 weeks ago
- ☆62Updated 2 weeks ago
- Python image segmentation plugin☆31Updated 4 years ago
- ☆22Updated last year
- QuPath extension for Segment Anything Model (SAM)☆103Updated last week
- SlideJ: an ImageJ plugin for WSI processing☆15Updated 5 years ago
- Python package for reading DICOM WSI file sets.☆41Updated last week
- Cytomine-Core is the main web server implementing the Cytomine API☆69Updated 2 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆53Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year