mstritt / orbit-image-analysis
A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
☆60Updated 3 years ago
Related projects: ⓘ
- The official deployment of the Digital Slide Archive and HistomicsTK.☆108Updated 2 weeks ago
- Lazily load multiscale whole-slide images with openslide and dask☆32Updated last year
- multimodal whole slide image registration in a graph structure☆76Updated 2 months ago
- A Girder plugin for pathology image annotations and analysis.☆56Updated last week
- Bio-Formats image file format to raw format converter☆77Updated last month
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 5 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆102Updated last month
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆29Updated 3 years ago
- An open-source digital pathology based rapid image annotation tool☆74Updated 5 months ago
- Raw format to OME-TIFF converter☆46Updated 2 months ago
- Delete the label from a whole-slide image☆57Updated 3 years ago
- Quantitative Pathology☆49Updated this week
- ☆29Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 3 months ago
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Full package for applying deep learning to virtual slides.☆67Updated 6 years ago
- Cloud-based data annotation tools for biological images☆73Updated 7 months ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆39Updated last year
- Read and write life sciences file formats☆130Updated this week
- ⚡ Open-source software for deep learning-based digital pathology☆121Updated 3 months ago
- QuPath extension for Segment Anything Model (SAM)☆88Updated 2 weeks ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆58Updated 4 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆21Updated 3 weeks ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 3 years ago
- Cytomine Community Edition Legacy☆35Updated last year
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆27Updated 2 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- ☆20Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆31Updated last month
- Easily read and write ome-tiff images in python☆26Updated 4 months ago