β‘ Open-source software for deep learning-based digital pathology
β141Jun 14, 2024Updated last year
Alternatives and similar repositories for FAST-Pathology
Users that are interested in FAST-Pathology are comparing it to the libraries listed below
Sorting:
- π¬ Code-free deep segmentation for computational pathologyβ56Jun 14, 2024Updated last year
- π H2G-Net: Segmentation of breast cancer region from whole slide imagesβ28Jul 21, 2025Updated 7 months ago
- An open-source digital pathology based rapid image annotation toolβ90Updated this week
- Library for Digital Pathology Image Processingβ442Feb 25, 2026Updated last week
- Tools for computational pathologyβ441Oct 24, 2025Updated 4 months ago
- a toolbox for manipulation of digital pathology slides and annotationsβ19Aug 11, 2020Updated 5 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.β511Updated this week
- Powerful, open-source AI tools for digital pathology.β352Nov 13, 2025Updated 3 months ago
- Pipeline for computational pathologyβ37Jan 4, 2024Updated 2 years ago
- Open source whole slide image preparation and viewing pipelineβ13Mar 16, 2020Updated 5 years ago
- Glioblastoma Surgery Imaging - Reporting And Data System (GSI-RADS).β20May 30, 2022Updated 3 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learnβ¦β24Feb 8, 2022Updated 4 years ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"β18Aug 17, 2024Updated last year
- HistoQC is an open-source quality control tool for digital pathology slidesβ318Dec 10, 2025Updated 2 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/β28Dec 3, 2025Updated 3 months ago
- A tool for training machine-learning models with whole-slide imaging datasetsβ26Dec 27, 2023Updated 2 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application bringsβ¦β32Feb 18, 2022Updated 4 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.β134Feb 25, 2026Updated last week
- CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annoβ¦β20Updated this week
- Open source tools for computational pathology - Nature BMEβ1,611Apr 14, 2025Updated 10 months ago
- Stain normalization tools for histological analysis and computational pathologyβ177Nov 13, 2025Updated 3 months ago
- A Girder plugin for pathology image annotations and analysis.β79Updated this week
- A Python toolkit for pathology image analysis algorithms.β465Updated this week
- Program for the analysis and visualization of whole-slide images in digital pathologyβ664Sep 12, 2023Updated 2 years ago
- Histopathology Image Analysisβ93Jul 6, 2023Updated 2 years ago
- β16Jan 18, 2023Updated 3 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computβ¦β267Dec 23, 2023Updated 2 years ago
- A Python library for deep learning on whole-slide imagesβ52Nov 5, 2021Updated 4 years ago
- A web-based annnotation system for easy annotation of image sequences such as ultrasound and camera recordingsβ41Dec 12, 2025Updated 2 months ago
- A framework for high-performance medical image processing, neural network inference and visualizationβ500Updated this week
- An open-source robotic ultrasound systemβ27Aug 21, 2020Updated 5 years ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel diβ¦β16Mar 3, 2023Updated 3 years ago
- Trained models for use with QuPathβ16Aug 7, 2021Updated 4 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'β10Nov 24, 2021Updated 4 years ago
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]β22Oct 1, 2025Updated 5 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.β111Nov 8, 2025Updated 3 months ago
- β73Feb 22, 2026Updated last week
- Delete the label from a whole-slide imageβ65Mar 18, 2021Updated 4 years ago
- TiffSlide - cloud native openslide-python replacement based on tifffileβ105May 30, 2025Updated 9 months ago