Alternatives and similar repositories for FAST-Pathology

Users that are interested in FAST-Pathology are comparing it to the libraries listed below

• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆87Updated last week
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆76Updated last month
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆130Updated this week
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆70Updated 2 years ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆107Updated last week
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆33Updated 11 months ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆74Updated 10 months ago
• DIAGNijmegen / pathology-hooknet
  ☆66Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated last year
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆35Updated 2 years ago
• choosehappy / HistoQC
  HistoQC is an open-source quality control tool for digital pathology slides
  ☆310Updated 2 weeks ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆189Updated 4 months ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆33Updated 5 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆69Updated 2 years ago
• impromptuRong / hd_wsi
  ☆37Updated 7 months ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆57Updated 2 years ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• mahmoodlab / TOAD
  AI-based pathology predicts origins for cancers of unknown primary - Nature
  ☆176Updated 4 years ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated last week
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆160Updated this week
• nadeemlab / DeepLIIF
  Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …
  ☆225Updated 2 weeks ago
• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆56Updated 2 years ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆38Updated last year
• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆23Updated 2 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆123Updated 3 months ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆66Updated 2 years ago
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆56Updated 11 months ago