β‘ Open-source software for deep learning-based digital pathology
β145Jun 14, 2024Updated 2 years ago
Alternatives and similar repositories for FAST-Pathology
Users that are interested in FAST-Pathology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π¬ Code-free deep segmentation for computational pathologyβ58Jun 14, 2024Updated 2 years ago
- π H2G-Net: Segmentation of breast cancer region from whole slide imagesβ29Jul 21, 2025Updated last year
- Glioblastoma Surgery Imaging - Reporting And Data System (GSI-RADS).β20May 30, 2022Updated 4 years ago
- Library for Digital Pathology Image Processingβ462Updated this week
- An open-source digital pathology based rapid image annotation toolβ91Updated this week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for computational pathologyβ461Jul 17, 2026Updated 3 weeks ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.β545Updated this week
- Powerful, open-source AI tools for digital pathology.β371May 7, 2026Updated 3 months ago
- Pipeline for computational pathologyβ43Jan 4, 2024Updated 2 years ago
- A web-based annnotation system for easy annotation of image sequences such as ultrasound and camera recordingsβ41Dec 12, 2025Updated 8 months ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learnβ¦β24Feb 8, 2022Updated 4 years ago
- 3D Slicer plugin for automatic segmentation and generation of standardized clinical reports for the most common brain tumors, using MRI vβ¦β16Nov 10, 2025Updated 9 months ago
- a toolbox for manipulation of digital pathology slides and annotationsβ18Aug 11, 2020Updated 6 years ago
- Open source tools for computational pathology - Nature BMEβ1,724Apr 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel diβ¦β17Mar 3, 2023Updated 3 years ago
- Open source whole slide image preparation and viewing pipelineβ13Mar 16, 2020Updated 6 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/β30Dec 3, 2025Updated 8 months ago
- A tool for training machine-learning models with whole-slide imaging datasetsβ26Dec 27, 2023Updated 2 years ago
- An open-source robotic ultrasound systemβ29Aug 21, 2020Updated 5 years ago
- A framework for high-performance medical image processing, neural network inference and visualizationβ515Jul 29, 2026Updated 2 weeks ago
- HistoQC is an open-source quality control tool for digital pathology slidesβ329Aug 3, 2026Updated last week
- The official deployment of the Digital Slide Archive and HistomicsTK.β141Updated this week
- Program for the analysis and visualization of whole-slide images in digital pathologyβ682Sep 12, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"β18Aug 17, 2024Updated last year
- A Python toolkit for pathology image analysis algorithms.β482Aug 6, 2026Updated last week
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application bringsβ¦β32Feb 18, 2022Updated 4 years ago
- Stain normalization tools for histological analysis and computational pathologyβ190Nov 13, 2025Updated 9 months ago
- A Girder plugin for pathology image annotations and analysis.β81Updated this week
- β16Jan 18, 2023Updated 3 years ago
- Trained models for use with QuPathβ16Jun 25, 2026Updated last month
- CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annoβ¦β20Aug 6, 2026Updated last week
- Gradient Accumulation for TensorFlow 2β53Feb 11, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumesβ45Jan 15, 2026Updated 6 months ago
- Histopathology Image Analysisβ95Jul 6, 2023Updated 3 years ago
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Pathologβ¦β17Oct 15, 2021Updated 4 years ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image filesβ37Apr 29, 2024Updated 2 years ago
- The source code of 'Diagnose Like A Pathologist: Weakly-Supervised Pathologist-Tree Network for Slide-Level Immunohistochemical Scoring' β¦β24Mar 16, 2021Updated 5 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computβ¦β273Dec 23, 2023Updated 2 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentationβ128Aug 23, 2022Updated 3 years ago