jgamper / compay-syntaxLinks
Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
☆55Updated 2 years ago
Alternatives and similar repositories for compay-syntax
Users that are interested in compay-syntax are comparing it to the libraries listed below
Sorting:
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆78Updated 2 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆72Updated 4 months ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆93Updated 5 years ago
- Re-stained whole slide image alignment☆33Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆54Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- Some stain normalization code☆88Updated 2 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36Updated 4 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆160Updated 10 months ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆80Updated 2 years ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆82Updated 3 years ago
- CNN based segmentation codes☆47Updated 2 years ago
- Interactive Segmentation of Nucleus☆63Updated 2 years ago
- This is the MATLAB code for stain separation and color normalization in computational pathology (histopathological images)☆69Updated 9 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆40Updated 3 months ago
- H&E histopathological staining normalization☆109Updated 5 years ago
- Histopathology Image Analysis☆92Updated last year
- Staining unmixing and normalization for histopathology images.☆47Updated 6 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆104Updated 5 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 3 years ago
- ☆48Updated 3 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- Pathology image classifier architecture☆13Updated 5 years ago
- adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"☆31Updated 4 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago