Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
☆55Nov 22, 2022Updated 3 years ago
Alternatives and similar repositories for compay-syntax
Users that are interested in compay-syntax are comparing it to the libraries listed below
Sorting:
- Tools for tissue image stain normalisation and augmentation in Python 3☆348May 8, 2021Updated 4 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Oct 3, 2019Updated 6 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36May 18, 2021Updated 4 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Jul 25, 2024Updated last year
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Aug 7, 2025Updated 6 months ago
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆13Apr 8, 2023Updated 2 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆53Apr 2, 2023Updated 2 years ago
- Preprocessing module for large histological images☆21Jun 16, 2023Updated 2 years ago
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 6 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆111Jun 9, 2023Updated 2 years ago
- Stain normalization tools for histological analysis and computational pathology☆176Nov 13, 2025Updated 3 months ago
- Re-stained whole slide image alignment☆36Oct 16, 2023Updated 2 years ago
- 首个临床级别的 AI 系统可用源码☆69Dec 17, 2021Updated 4 years ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Aug 9, 2022Updated 3 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 4 years ago
- Feature Aware Normalization - Code for "Context-based Normalization of Histological Stains using Deep Convolutional Features"☆15Nov 11, 2018Updated 7 years ago
- ☆38Feb 16, 2023Updated 3 years ago
- Multi-Instance-Learning to check breast cancer. An implementation of Patch-based Convolutional Neural Network for Whole Slide Tissue Imag…☆51Jan 29, 2018Updated 8 years ago
- CBMIL: Clustering-based Multi-instance Learning Network for Whole Slide Image Classification☆11Mar 5, 2023Updated 2 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Apr 16, 2021Updated 4 years ago
- To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory avail…☆101Sep 8, 2023Updated 2 years ago
- A Python toolkit for pathology image analysis algorithms.☆465Jan 12, 2026Updated last month
- GPU-accelerated stain normalization command line tool☆24Oct 19, 2023Updated 2 years ago
- ☆17Aug 8, 2022Updated 3 years ago
- MuRCL: Multi-instance Reinforcement Contrastive Learning for Whole Slide Image Classification☆28Dec 16, 2021Updated 4 years ago
- Python Whole Slide Image Preprocessing☆298Nov 15, 2022Updated 3 years ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 5 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆332Aug 22, 2022Updated 3 years ago
- WSICS☆30Apr 19, 2019Updated 6 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Dec 10, 2025Updated 2 months ago
- A whole-slide image reader for TensorFlow☆24Nov 24, 2025Updated 3 months ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Jul 29, 2025Updated 7 months ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆83Aug 26, 2021Updated 4 years ago
- Pan-cancer tils analysis study by Hongming Xu☆14Oct 29, 2020Updated 5 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago