Open source whole slide image preparation and viewing pipeline
☆13Mar 16, 2020Updated 6 years ago
Alternatives and similar repositories for wsi
Users that are interested in wsi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 8 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆18Aug 11, 2020Updated 6 years ago
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago
- A simple web application for for viewing and navigating pathology whole-slide-images in your browser.☆16Sep 22, 2023Updated 2 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 6 years ago
- It will be the supporting scripts for tct project.☆17Oct 10, 2022Updated 3 years ago
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆33Jul 23, 2026Updated last month
- Delete the label from a whole-slide image☆66Mar 18, 2021Updated 5 years ago
- The Zhang's lab aims to provide a model or GUI of algorithm for example and further studies. ALL of them are used just for research, but…☆10Apr 13, 2020Updated 6 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆58Apr 16, 2021Updated 5 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Mar 19, 2020Updated 6 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Aug 30, 2024Updated last year
- A web-based system for learning pathology☆14Aug 3, 2026Updated 3 weeks ago
- ☆21Aug 10, 2026Updated 2 weeks ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆141Updated this week
- 🔬 Code-free deep segmentation for computational pathology☆58Jun 14, 2024Updated 2 years ago
- Simple prototype of converting whole slide image (WSI) to multiframe DICOM images☆15Nov 25, 2022Updated 3 years ago
- An automated Endometrial Cancer Diagnosis approach using Histopathological Image through image Preprocessing and Optimized gated Multi-La…☆11Jan 26, 2025Updated last year
- An OpenSeadragon plugin that adds canvas overlay capability☆24Apr 23, 2019Updated 7 years ago
- A set of codes to classify H&E slides using deep learning☆29Mar 9, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆18Jun 24, 2019Updated 7 years ago
- Rule-Based Thyroid Whole Slide Image Diagnosis☆10Aug 12, 2020Updated 6 years ago
- KimiaPath24: Dataset for retrieval and classification in digital pathology☆13Jun 4, 2017Updated 9 years ago
- ☆31Jan 19, 2026Updated 7 months ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆19Oct 3, 2019Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. epiR — Tools for the Analysis of Epidemiological Data☆10Aug 3, 2026Updated 3 weeks ago
- Proof of concept whole slide imaging viewer on top of Google Cloud Healthcare DICOM API.☆41Jan 6, 2021Updated 5 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆81Jul 29, 2025Updated last year
- Python package for reading DICOM WSI file sets.☆51Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆20Jan 27, 2025Updated last year
- A pyqt5 widget for viewing whole-slide images with Openslide☆21Feb 3, 2018Updated 8 years ago
- Ai powered web app to detect Metastatic Cancer and Invasive Ductal Carcinoma in histopathology tissue images.☆24Jun 14, 2019Updated 7 years ago
- Open source optical mark recognition (OMR) software for creating, tagging and reading bubble sheet forms. For Windows, Mac & Linux.☆31Jul 1, 2022Updated 4 years ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆13May 30, 2022Updated 4 years ago
- ☆12Mar 1, 2020Updated 6 years ago
- GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -…☆13Aug 24, 2023Updated 3 years ago