luisvalesilva / wsipreView external linksLinks
Handling whole-slide images with region-level annotations.
☆10Jan 14, 2019Updated 7 years ago
Alternatives and similar repositories for wsipre
Users that are interested in wsipre are comparing it to the libraries listed below
Sorting:
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 7 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 5 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- The Zhang's lab aims to provide a model or GUI of algorithm for example and further studies. ALL of them are used just for research, but…☆10Apr 13, 2020Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. epiR — Tools for the Analysis of Epidemiological Data☆10Dec 15, 2025Updated 2 months ago
- ☆10Nov 5, 2020Updated 5 years ago
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated last year
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 2 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago
- A set of codes to classify H&E slides using deep learning☆29Mar 9, 2022Updated 3 years ago
- NetFrame is a flexible and scalable deep-learning framework to build segmentation model on large scale pathological images.☆13Mar 24, 2023Updated 2 years ago
- ☆18Jan 27, 2025Updated last year
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 4 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36May 18, 2021Updated 4 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 4 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- ☆43Jul 18, 2022Updated 3 years ago
- ☆13Aug 30, 2024Updated last year
- ☆22Apr 16, 2022Updated 3 years ago
- An interactive machine learning framework for large histopathology images.☆21Dec 27, 2023Updated 2 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- CNN based segmentation codes☆48Jan 19, 2023Updated 3 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- A pyqt5 widget for viewing whole-slide images with Openslide☆22Feb 3, 2018Updated 8 years ago
- ☆50May 9, 2022Updated 3 years ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Sep 2, 2020Updated 5 years ago
- ☆30Jan 19, 2026Updated 3 weeks ago
- ☆20Dec 20, 2022Updated 3 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Feb 7, 2020Updated 6 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory avail…☆101Sep 8, 2023Updated 2 years ago
- Segmenting WSIs using Deep Convolutional Neural Networks☆19Aug 9, 2018Updated 7 years ago
- An OpenSeadragon plugin that adds canvas overlay capability☆24Apr 23, 2019Updated 6 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆30Sep 30, 2020Updated 5 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Apr 16, 2021Updated 4 years ago
- ☆26Sep 29, 2024Updated last year
- This module allows users to analyze k-means & hierarchical clustering, and visualize results of Principal Component, Correspondence Analy…☆10Jan 7, 2026Updated last month
- This module is a tool for calculating correlations such as Partial, Tetrachoric, Intraclass correlation coefficients, Bootstrap agreement…☆11Jan 31, 2026Updated 2 weeks ago