luisvalesilva / wsipreLinks
Handling whole-slide images with region-level annotations.
☆10Updated 6 years ago
Alternatives and similar repositories for wsipre
Users that are interested in wsipre are comparing it to the libraries listed below
Sorting:
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Updated 7 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 3 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 2 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated last year
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆43Updated 3 weeks ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Updated 5 years ago
- An open-source digital pathology based rapid image annotation tool☆82Updated last month
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Updated 2 years ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Updated 5 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆72Updated 7 months ago
- 🔬 Code-free deep segmentation for computational pathology☆55Updated last year
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Updated 4 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆29Updated 3 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆162Updated last year
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆50Updated 4 years ago
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 5 years ago
- Python 3 library for the augmentation & normalization of H&E images☆58Updated 2 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆79Updated last month
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆12Updated 2 years ago
- Intelligent data partitioning using quality control metrics☆18Updated 2 months ago