luisvalesilva / wsipre
Handling whole-slide images with region-level annotations.
☆10Updated 6 years ago
Alternatives and similar repositories for wsipre:
Users that are interested in wsipre are comparing it to the libraries listed below
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆78Updated 2 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆11Updated 4 years ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Updated 6 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 2 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆40Updated 2 months ago
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- Data and code to accompany our Nature publication☆45Updated 2 years ago
- CNN based segmentation codes☆47Updated 2 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 4 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Updated 4 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆28Updated 3 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆40Updated 2 years ago
- Repository for DCIS segmentation pipeline☆12Updated 2 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36Updated 3 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆50Updated 4 years ago
- ☆43Updated 2 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆27Updated 4 years ago
- Re-stained whole slide image alignment☆33Updated last year
- A pipeline to segment tissue from the background in histological images☆68Updated 2 years ago
- Suspicious Regions-Based Whole Slide Image Analysis☆10Updated 2 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 2 years ago
- ☆47Updated 2 years ago
- Intelligent data partitioning using quality control metrics☆18Updated 5 months ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆71Updated 3 months ago
- ☆18Updated 5 years ago