luisvalesilva / wsipre
Handling whole-slide images with region-level annotations.
☆10Updated 6 years ago
Alternatives and similar repositories for wsipre:
Users that are interested in wsipre are comparing it to the libraries listed below
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- Survival Convolutional Neural Networks☆69Updated last year
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Updated 6 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Data and code to accompany our Nature publication☆45Updated 2 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 4 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 2 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆11Updated 4 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆40Updated last month
- Python scripts for automatic Whole-Slide Image preprocessing.☆36Updated 3 years ago
- Repository for DCIS segmentation pipeline☆12Updated 2 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆50Updated 3 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆19Updated 4 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆15Updated 3 years ago
- An open-source digital pathology based rapid image annotation tool☆76Updated this week
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆27Updated 4 years ago
- Coincides with blogpost for using geojson and shapely☆31Updated 4 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- ☆42Updated last year
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆69Updated 2 months ago
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆12Updated last year
- Pathology image classifier architecture☆12Updated 5 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Updated 4 years ago
- Re-stained whole slide image alignment☆32Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 9 months ago