SarderLab / extract-xml-regionLinks
A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope
☆12Updated 5 years ago
Alternatives and similar repositories for extract-xml-region
Users that are interested in extract-xml-region are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆28Updated 5 years ago
- ☆15Updated 7 months ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- A pan-cancer platform for mutation prediction from routine histology☆69Updated 4 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 6 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- ☆49Updated 3 years ago
- ☆16Updated 8 months ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- First commit☆63Updated 3 years ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- Tools to build deep learning pipelines.☆109Updated 10 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆25Updated 3 months ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆45Updated 4 years ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Updated 3 years ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆51Updated last year
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- ☆56Updated 3 years ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- ☆64Updated last year
- Awesome Domain Generalization for Computational Pathology☆18Updated 11 months ago
- ☆17Updated 3 years ago
- Handling whole-slide images with region-level annotations.☆10Updated 6 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated 2 years ago
- Pipeline for computational pathology☆38Updated last year