SarderLab / extract-xml-region
A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope
☆11Updated 4 years ago
Related projects: ⓘ
- ☆11Updated last year
- ☆15Updated 2 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆17Updated 4 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆25Updated 3 years ago
- Pathology image classifier architecture☆12Updated 4 years ago
- A set of codes to classify H&E slides using deep learning☆27Updated 2 years ago
- Re-stained whole slide image alignment☆30Updated 11 months ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆17Updated 5 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆37Updated 2 months ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆37Updated 3 years ago
- ☆49Updated 2 years ago
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆12Updated last year
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 3 years ago
- ☆43Updated last year
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆65Updated 11 months ago
- Data and code to accompany our Nature publication☆41Updated 2 years ago
- Pipeline for computational pathology☆31Updated 8 months ago
- Code from Foersch et al. (Under Construction / Development)☆33Updated last year
- GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images☆10Updated last year
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆19Updated 3 months ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- Histopathology Image Analysis☆89Updated last year
- Solid Tumor Associative Modeling in Pathology☆29Updated last month
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated 11 months ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆16Updated 2 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Updated 4 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆63Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sources☆13Updated 2 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆21Updated 2 years ago
- Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning☆32Updated 3 years ago