A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope
☆12Jul 3, 2020Updated 5 years ago
Alternatives and similar repositories for extract-xml-region
Users that are interested in extract-xml-region are comparing it to the libraries listed below
Sorting:
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 4 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- cox loss function and c-index calculation with pytorch☆12Jun 15, 2019Updated 6 years ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆30Sep 30, 2020Updated 5 years ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 7 years ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Aug 9, 2022Updated 3 years ago
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 8 months ago
- NetFrame is a flexible and scalable deep-learning framework to build segmentation model on large scale pathological images.☆13Mar 24, 2023Updated 2 years ago
- ☆73Aug 27, 2025Updated 6 months ago
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated last year
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 2 years ago
- ☆19Jan 27, 2025Updated last year
- ☆13Aug 30, 2024Updated last year
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Feb 24, 2026Updated 3 weeks ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- Web app & Backend API☆15Oct 24, 2023Updated 2 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Apr 16, 2021Updated 4 years ago
- CMU15445 2022 lab集合☆12Mar 25, 2023Updated 2 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Mar 4, 2023Updated 3 years ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Sep 2, 2020Updated 5 years ago
- ☆43Jul 18, 2022Updated 3 years ago
- A pyqt5 widget for viewing whole-slide images with Openslide☆22Feb 3, 2018Updated 8 years ago
- A set of codes to classify H&E slides using deep learning☆29Mar 9, 2022Updated 4 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Dec 17, 2020Updated 5 years ago
- ☆12Feb 11, 2021Updated 5 years ago
- The Zhang's lab aims to provide a model or GUI of algorithm for example and further studies. ALL of them are used just for research, but…☆10Apr 13, 2020Updated 5 years ago
- 亿赛通文件在线解密☆15Jun 26, 2025Updated 8 months ago
- ☆27May 15, 2023Updated 2 years ago
- 📚 가늘고 길게 가는 걸 목표로 하는 책 스터디☆13Feb 24, 2026Updated 3 weeks ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 5 years ago
- Repository for DCIS segmentation pipeline☆11Nov 22, 2022Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆178Nov 13, 2025Updated 4 months ago
- 基于django-docx通过调用word模板，利用docx往模板的图表、表格、段落填充数据，自动化生成分析报告。☆12Jun 3, 2020Updated 5 years ago
- ☆12Jun 2, 2018Updated 7 years ago
- ☆20Dec 20, 2022Updated 3 years ago