SarderLab / extract-xml-regionLinks
A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope
☆12Updated 5 years ago
Alternatives and similar repositories for extract-xml-region
Users that are interested in extract-xml-region are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆28Updated 4 years ago
- ☆14Updated 6 months ago
- ☆15Updated 7 months ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆44Updated 4 years ago
- Gene mutation and pathway activity prediction from H&E slides☆35Updated 3 years ago
- ☆56Updated 3 years ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- A pan-cancer platform for mutation prediction from routine histology☆69Updated 4 years ago
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- First commit☆62Updated 3 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Awesome Domain Generalization for Computational Pathology☆18Updated 10 months ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Some stain normalization code☆90Updated 2 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated last year
- Tools to build deep learning pipelines.☆109Updated 9 months ago
- ☆17Updated 3 years ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Updated 3 years ago
- ☆49Updated 3 years ago
- Deep Learning-based Frozen Section to FFPE Translation☆63Updated 11 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆105Updated 9 months ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆49Updated last year
- H&E histopathological staining normalization☆109Updated 5 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 4 years ago