BIOP / BIOP-desktop
☆12Updated last week
Alternatives and similar repositories for BIOP-desktop:
Users that are interested in BIOP-desktop are comparing it to the libraries listed below
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- ☆15Updated 2 years ago
- napari plugin for trackastra☆13Updated 6 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated last week
- Browse your OMERO database from within napari.☆36Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆12Updated last week
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆32Updated last month
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆15Updated last month
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆16Updated last month
- ☆23Updated 3 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last week
- dask empowered fast4dreg☆11Updated 5 months ago
- A napari plugin to analysis point spread functions.☆12Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last month
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last month
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- Running compute-intense parts of BigStitcher distributed☆26Updated 3 weeks ago