BIOP / BIOP-desktopView external linksLinks
☆14Oct 24, 2025Updated 3 months ago
Alternatives and similar repositories for BIOP-desktop
Users that are interested in BIOP-desktop are comparing it to the libraries listed below
Sorting:
- ☆15Jan 20, 2026Updated 3 weeks ago
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- A python package for fitting splines.☆23Feb 6, 2026Updated last week
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 3 years ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 4 months ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 8 months ago
- ☆16Jul 21, 2023Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- napari plugin for trackastra☆17Nov 12, 2025Updated 3 months ago
- ABBA, controlled from python☆19Nov 24, 2025Updated 2 months ago
- Fractal backend☆18Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆47Jan 21, 2026Updated 3 weeks ago
- Arduino Serial Data Viewer☆10Jan 28, 2021Updated 5 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆81Feb 3, 2026Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 6 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 5 months ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 9 months ago
- Guide to python package development for scientists☆27Jan 5, 2026Updated last month
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- 3D/4D volumetric rendering of microscopy data☆26Nov 10, 2025Updated 3 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Particle tracking by solving linear assignment problem.☆62Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Oct 22, 2025Updated 3 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Sep 26, 2024Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Mar 14, 2025Updated 11 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Feb 6, 2026Updated last week
- A template repo used to make new napari plugins☆31Feb 1, 2026Updated last week
- Connecting Java/ImgLib2 + Python/NumPy☆31Updated this week
- Interactive visualization of spatial omics data☆75Feb 1, 2026Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Feb 5, 2026Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Nov 13, 2025Updated 3 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Dec 11, 2025Updated 2 months ago
- Simple (and currently incomplete) Python wrapper around the Opentrons HTTP API☆11Nov 26, 2025Updated 2 months ago