PathologyDataScience / HistomicsML
An interactive machine learning framework for large histopathology images.
☆20Updated last year
Alternatives and similar repositories for HistomicsML:
Users that are interested in HistomicsML are comparing it to the libraries listed below
- Handling whole-slide images with region-level annotations.☆9Updated 6 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Deep learning survival models☆119Updated 2 years ago
- Survival Convolutional Neural Networks☆68Updated last year
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆60Updated 3 years ago
- ☆32Updated 9 months ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆54Updated 2 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 3 years ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Updated 6 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 5 years ago
- Base and example Docker images for the Digital Mammography DREAM Challenge☆15Updated 8 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 4 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆40Updated 2 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- A torch package for learning diagnosis models from temporal patient data.☆113Updated 7 years ago
- Curated metadata for all studies published in the Image Data Resource☆14Updated this week
- Python utilities for building integrated views of TCGA data.☆31Updated 6 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆23Updated last year
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- Methods for Image-Based Cell Profiling☆50Updated 9 months ago
- Starter code for the CellSignal NeurIPS 2019 competition.☆45Updated 6 months ago
- Delete the label from a whole-slide image☆63Updated 3 years ago
- Code repository for our paper titled "Near real-time intraoperative brain tumor diagnosis using stimulated Raman histology and deep neura…☆46Updated 4 years ago
- ☆44Updated 6 years ago
- PyTorch implementation of Deep Survival Models.☆18Updated 7 years ago
- Pieces of code likely to be useful as part of larger projects☆20Updated 2 years ago
- U-net based segmentation of nuclei in microscopy images☆52Updated 6 years ago
- ☆25Updated 2 years ago
- ☆22Updated last year