Alternatives and similar repositories for CohortFinder

Users that are interested in CohortFinder are comparing it to the libraries listed below

• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆34Updated 3 months ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆88Updated 3 weeks ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆61Updated 3 years ago
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆22Updated 4 years ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆41Updated 3 months ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆26Updated last week
• kaiko-ai / towards_large_pathology_fms
  This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…
  ☆34Updated 10 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated last year
• DigitalSlideArchive / HistomicsStream
  A whole-slide image reader for TensorFlow
  ☆24Updated 2 weeks ago
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆53Updated 4 years ago
• markowetzlab / pathml-tutorial
  A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…
  ☆24Updated 3 years ago
• KatherLab / preProcessing
  ☆45Updated 2 years ago
• masih4 / DigiPathoImageAnalysis
  List of academic institutes/companies working on computer-based digital pathology image analysis
  ☆45Updated 4 months ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆107Updated last month
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆71Updated 2 years ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆110Updated 10 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated this week
• HistAI / hibou
  Hibou: Foundational Models for Pathology
  ☆75Updated last year
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆33Updated 5 years ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆139Updated last year
• jlevy44 / WSI-GTFE
  Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
  ☆23Updated 5 years ago
• huangzhii / IMPRESS
  ☆20Updated 2 years ago
• daangeijs / simple_wsi_viewer
  A simple web application for for viewing and navigating pathology whole-slide-images in your browser.
  ☆16Updated 2 years ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆38Updated last year
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆102Updated last week
• DataX-JieHao / PAGE-Net
  A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data
  ☆18Updated 5 years ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆48Updated 3 years ago