choosehappy / CohortFinderLinks
Intelligent data partitioning using quality control metrics
☆18Updated last month
Alternatives and similar repositories for CohortFinder
Users that are interested in CohortFinder are comparing it to the libraries listed below
Sorting:
- A tool for rapidly labeling objects using deep learning feature embedding☆32Updated 11 months ago
- An open-source digital pathology based rapid image annotation tool☆79Updated this week
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Updated 4 years ago
- ☆45Updated 2 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆39Updated 3 weeks ago
- ☆20Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆57Updated 2 years ago
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated 2 weeks ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆72Updated last year
- List of academic institutes/companies working on computer-based digital pathology image analysis☆41Updated 4 months ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 7 months ago
- Evaluation framework for oncology foundation models (FMs)☆109Updated this week
- 🔬 Code-free deep segmentation for computational pathology☆53Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆55Updated 2 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated last year
- This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…☆30Updated 6 months ago
- Pipeline for computational pathology☆38Updated last year
- Solid Tumor Associative Modeling in Pathology☆81Updated this week
- Delete the label from a whole-slide image☆65Updated 4 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆34Updated last year
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- Coincides with blogpost for using geojson and shapely☆32Updated 4 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆133Updated last year
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated 3 weeks ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆33Updated last year
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago