choosehappy / CohortFinderLinks
Intelligent data partitioning using quality control metrics
☆18Updated 2 months ago
Alternatives and similar repositories for CohortFinder
Users that are interested in CohortFinder are comparing it to the libraries listed below
Sorting:
- A tool for rapidly labeling objects using deep learning feature embedding☆33Updated 11 months ago
- An open-source digital pathology based rapid image annotation tool☆81Updated last week
- Python 3 library for the augmentation & normalization of H&E images☆58Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆75Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆55Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆36Updated last year
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- ☆45Updated 2 years ago
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- Evaluation framework for oncology foundation models (FMs)☆112Updated last week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- Solid Tumor Associative Modeling in Pathology☆82Updated this week
- Pipeline for computational pathology☆38Updated last year
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- GrandQC tool for tissue detection and quality control in pathology☆57Updated 5 months ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated last month
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 6 months ago
- ☆20Updated 2 years ago
- This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…☆33Updated 6 months ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆39Updated last month
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 8 months ago
- A Girder plugin for pathology image annotations and analysis.☆73Updated this week
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆55Updated 2 years ago
- Deep Learning-based Frozen Section to FFPE Translation☆62Updated 10 months ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- Re-stained whole slide image alignment☆34Updated last year
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- ☆48Updated 3 years ago