bgilbert / anonymize-slide

Related projects: ⓘ

• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆108Updated 2 weeks ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆74Updated 5 months ago
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆56Updated last week
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆121Updated 3 months ago
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆28Updated 4 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆31Updated last month
• zhaoxuanma / Deeplearning-digital-pathology
  Full package for applying deep learning to virtual slides.
  ☆67Updated 6 years ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆30Updated 11 months ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆27Updated 7 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆31Updated 8 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆50Updated 3 months ago
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆25Updated 4 months ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆65Updated 11 months ago
• KatherLab / preProcessing
  ☆43Updated last year
• PingjunChen / tissueloc
  Whole Slide Digital Pathology Image Tissue Localization
  ☆44Updated 11 months ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆91Updated last week
• PathologyDataScience / HistomicsML2
  A tool for training machine-learning models with whole-slide imaging datasets
  ☆22Updated 8 months ago
• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆48Updated 11 months ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆28Updated 3 years ago
• HistoCleanQUB / HistoClean
  HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…
  ☆27Updated 2 years ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆21Updated 3 weeks ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆89Updated last year
• lucasrla / wsi-tile-cleanup
  Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning
  ☆25Updated 3 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆63Updated last year
• jgamper / compay-syntax
  Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
  ☆55Updated last year
• DIAGNijmegen / pathology-streaming-pipeline
  Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.
  ☆75Updated last year
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆102Updated last month
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆60Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆50Updated 2 years ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year