oicr-gsi / robust-paper

Related projects: ⓘ

• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆16Updated 11 months ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆24Updated 6 years ago
• aidanbudd / bosc2015
  Using BOSC2015 unconference sessions on building successful open source bioinformatics communities to write an open collaborative article
  ☆16Updated 8 years ago
• cjprybol / reproducibility-via-singularity
  A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
  ☆26Updated 7 years ago
• ypriverol / github-paper
  Plos in Computational Biology paper related with github for researchers, code, source and document
  ☆58Updated 8 years ago
• leipzig / SandwichesWithSnakemake
  This is a beginner's tutorial to Snakemake
  ☆70Updated 8 years ago
• mr-c / shouldacite
  Should you cite this software?
  ☆30Updated 4 years ago
• carpentries / undergrad-education-conversations
  Conversations about teaching computational skills to undergraduates
  ☆12Updated 2 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 2 months ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 3 years ago
• carpentries / carpentrycon
  Information and ideas for CarpentryCon
  ☆20Updated last month
• JasonJWilliamsNY / 2018_nih_datascience_rfi
  This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science
  ☆16Updated 6 years ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated 11 months ago
• swcarpentry / DEPRECATED-boot-camps
  DEPRECATED: please see individual lesson repositories for current material.
  ☆95Updated 8 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 4 years ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆26Updated 2 years ago
• DugongBioinformatics / Dugong
  Dugong - Scientific Linux Container
  ☆18Updated 6 years ago
• mblmicdiv / course2017
  Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.
  ☆21Updated 7 years ago
• tiagoantao / genomics-notebooks
  IPython notebooks to teach Genomics and Population Genetics
  ☆20Updated 7 years ago
• idekerlab / cyREST
  DEPRECATED. Please visit our new repository (cytoscape/cyREST)
  ☆28Updated 7 years ago
• jlanga / smsk
  Snakemake skeleton - Build workflows with Snakemake
  ☆16Updated 4 months ago
• greenelab / continuous_analysis
  Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
  ☆82Updated 3 years ago
• orchid00 / The_Carpentries_info
  Summary of the Carpentries pedagogic model and some lesson ideas from the community
  ☆13Updated 4 years ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆13Updated last year
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆17Updated this week
• k8hertweck / CarpentriesCribSheets
  instructor notes from Software Carpentry workshops
  ☆10Updated 5 years ago
• biojs / biojs2galaxy
  A fast tool to convert BioJS components into Galaxy visualization plugins.
  ☆14Updated 4 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 4 years ago
• xguse / cookiecutter-snakemake-analysis-pipeline
  A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
  ☆16Updated 8 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 5 years ago