cmap / cmapMLinks
Connectivity Map analysis in MATLAB
☆46Updated 4 years ago
Alternatives and similar repositories for cmapM
Users that are interested in cmapM are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆69Updated last month
- ☆38Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- ☆41Updated 5 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆64Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆58Updated 8 months ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆62Updated 5 years ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆47Updated 4 years ago
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- ☆31Updated 6 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- bioinformatics plotting and tools☆59Updated last year
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Updated 5 months ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 8 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated 5 months ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Signac☆26Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- ☆69Updated 2 years ago