Connectivity Map analysis in MATLAB
☆48Dec 10, 2021Updated 4 years ago
Alternatives and similar repositories for cmapM
Users that are interested in cmapM are comparing it to the libraries listed below
Sorting:
- Tools for manipulating annotated data matrices☆93Oct 13, 2021Updated 4 years ago
- L1000 peak deconvolution based on Bayesian analysis☆28Oct 10, 2021Updated 4 years ago
- ☆11Nov 24, 2022Updated 3 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- functions and algorithms for single cell RNA-seq analyses☆12Jan 26, 2021Updated 5 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆17Jan 12, 2023Updated 3 years ago
- ☆56Apr 6, 2020Updated 5 years ago
- ☆20Mar 28, 2017Updated 8 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Apr 8, 2023Updated 2 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Feb 22, 2025Updated last year
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago
- Publication Page for MPAL Paper 2019☆83Jun 25, 2020Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Apr 29, 2020Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- ☆13Nov 30, 2018Updated 7 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Implementation of Selective Clustering Annotated using Modes of Projections☆11May 19, 2020Updated 5 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- ☆12Jul 11, 2022Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 3 years ago
- Wrapper for generating PROV provenance information for commands and python scripts☆15Oct 14, 2014Updated 11 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 2 years ago
- Fast motif matching in R☆46Jan 24, 2024Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆75Sep 2, 2021Updated 4 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- ☆48Jan 7, 2025Updated last year