cmap / cmapMLinks
Connectivity Map analysis in MATLAB
☆46Updated 3 years ago
Alternatives and similar repositories for cmapM
Users that are interested in cmapM are comparing it to the libraries listed below
Sorting:
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- flexible CDR based distance metrics☆67Updated last year
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 4 years ago
- ☆38Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- Functional Embedding of Gene Signatures☆46Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- ☆40Updated 5 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 6 months ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆59Updated 4 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- R package for functionally scoring phosphorylation sites☆21Updated 5 years ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆47Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated last week
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- ☆27Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- DRUGZ software☆24Updated 4 years ago
- ☆30Updated 4 months ago