masato-ogishi / RepitopeLinks
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
☆24Updated last year
Alternatives and similar repositories for Repitope
Users that are interested in Repitope are comparing it to the libraries listed below
Sorting:
- ☆38Updated last year
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- PRedictor of IMmunogenic Epitopes☆24Updated 3 months ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆25Updated 6 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated 2 weeks ago
- R package for functionally scoring phosphorylation sites☆22Updated 5 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Absolve antibody variable domain sequence analysis☆18Updated 6 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Updated last year
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 2 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- ☆29Updated 2 months ago
- MHC Class I and Class II neoantigen binding prediction☆30Updated last month
- flexible CDR based distance metrics☆66Updated last year
- ☆48Updated 3 years ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Functional Embedding of Gene Signatures☆46Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆57Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 3 weeks ago
- ☆18Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- Python package and command line tool for epitope prediction☆52Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- DRUGZ software☆23Updated 4 years ago