Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
☆24Nov 17, 2023Updated 2 years ago
Alternatives and similar repositories for Repitope
Users that are interested in Repitope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated last year
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆27Aug 3, 2017Updated 9 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 3 years ago
- flexible CDR based distance metrics☆75Dec 16, 2025Updated 10 months ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆23Apr 6, 2022Updated 4 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 5 years ago
- R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes☆13Mar 23, 2016Updated 10 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 3 years ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 8 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PRedictor of IMmunogenic Epitopes☆37Sep 24, 2025Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 8 months ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Jul 13, 2018Updated 8 years ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆22Nov 22, 2022Updated 3 years ago
- ☆49Jul 7, 2022Updated 4 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated last year
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 3 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Oct 6, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- This project is a Graphical User Interface frontend for GlycoGenius, a python program that aims to be an all-in-one solution for data ana…☆17Sep 29, 2026Updated 2 weeks ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆109Updated this week
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆27Feb 23, 2020Updated 6 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆68Updated this week
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆17Aug 3, 2021Updated 5 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 5 months ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed…☆27Sep 28, 2021Updated 5 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Dec 4, 2020Updated 5 years ago
- Literature mining for T cell relations☆23Aug 5, 2022Updated 4 years ago
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated last year
- Collisional cross-section prediction for modified and multiconformational peptides☆14Aug 26, 2026Updated last month
- ☆15Jan 27, 2022Updated 4 years ago