masato-ogishi / RepitopeLinks
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
☆25Updated 2 years ago
Alternatives and similar repositories for Repitope
Users that are interested in Repitope are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆25Updated 4 months ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆51Updated 3 weeks ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- Prize-Collecting Steiner Forests for Interactomes☆63Updated last year
- Python package and command line tool for epitope prediction☆52Updated last year
- MHC Class I and Class II neoantigen binding prediction☆34Updated 6 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated 2 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last month
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Updated last week
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Updated 5 months ago
- Comprehensive Python client for the Uniprot REST API☆55Updated 3 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 2 weeks ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆97Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆50Updated last week
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆43Updated last week
- DRUGZ software☆24Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆16Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated last year