Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
☆25Nov 17, 2023Updated 2 years ago
Alternatives and similar repositories for Repitope
Users that are interested in Repitope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- This is a repo for the Machine Learning Immunogenicity Team in the August 2016 NCBI Hackathon☆24Oct 28, 2016Updated 9 years ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 6 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 7 months ago
- PRedictor of IMmunogenic Epitopes☆29Sep 24, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆27Jun 17, 2019Updated 6 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 7 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last month
- Tutorial on survival modeling with omics data☆11Mar 12, 2025Updated last year
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- This project is a Graphical User Interface frontend for GlycoGenius, a python program that aims to be an all-in-one solution for data ana…☆15Jan 25, 2026Updated 2 months ago
- ☆48Jul 7, 2022Updated 3 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆157Aug 20, 2024Updated last year
- software for the analysis and visualization of deep mutational scanning data☆34Oct 6, 2022Updated 3 years ago
- Python interface to running command-line and web-based MHC binding predictors☆101Mar 17, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- Plot multiple sequence alignment (MSA)☆16Sep 23, 2024Updated last year
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆27Feb 23, 2020Updated 6 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated 10 months ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- HOT regions paper☆11Jun 18, 2019Updated 6 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed…☆26Sep 28, 2021Updated 4 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Mar 18, 2026Updated last week
- ☆10Mar 18, 2026Updated last week
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago