masato-ogishi / RepitopeLinks
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
☆24Updated last year
Alternatives and similar repositories for Repitope
Users that are interested in Repitope are comparing it to the libraries listed below
Sorting:
- ☆38Updated last year
- PRedictor of IMmunogenic Epitopes☆23Updated 2 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Updated last year
- HLA-II ligand predictor.☆44Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆30Updated last week
- DIABLO - an integrative multi-group, multi-dataset classification method☆24Updated 6 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- ☆17Updated 3 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- Functional Embedding of Gene Signatures☆46Updated last year
- DRUGZ software☆23Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- ☆29Updated last month
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated 3 weeks ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 6 months ago
- Python package and command line tool for epitope prediction☆51Updated last year
- flexible CDR based distance metrics☆66Updated 11 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆38Updated last week
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated this week
- Immunoglobulin and T-Cell receptor rearrangement software☆49Updated last year
- Absolve antibody variable domain sequence analysis☆17Updated 6 years ago
- ☆48Updated 3 years ago