masato-ogishi / RepitopeView external linksLinks
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
☆25Nov 17, 2023Updated 2 years ago
Alternatives and similar repositories for Repitope
Users that are interested in Repitope are comparing it to the libraries listed below
Sorting:
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 6 years ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 5 months ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- This is a repo for the Machine Learning Immunogenicity Team in the August 2016 NCBI Hackathon☆24Oct 28, 2016Updated 9 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆27Jun 17, 2019Updated 6 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 3 years ago
- R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes☆13Mar 23, 2016Updated 9 years ago
- flexible CDR based distance metrics☆70Dec 16, 2025Updated 2 months ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆25Sep 24, 2025Updated 4 months ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Mar 21, 2025Updated 10 months ago
- Tutorial on survival modeling with omics data☆11Mar 12, 2025Updated 11 months ago
- Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.☆16Sep 6, 2018Updated 7 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Oct 6, 2021Updated 4 years ago
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆27Feb 23, 2020Updated 5 years ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 7 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆154Aug 20, 2024Updated last year
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Feb 24, 2017Updated 8 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆61Updated this week
- Plot multiple sequence alignment (MSA)☆16Sep 23, 2024Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆99Oct 4, 2024Updated last year
- MD DaVis: A python package to analyze molecular dynamics trajectories of proteins☆17Feb 17, 2025Updated 11 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated 9 months ago
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- ☆48Jul 7, 2022Updated 3 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated 4 months ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 4 months ago
- ☆22Oct 4, 2022Updated 3 years ago
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆24Jun 21, 2023Updated 2 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆89Sep 15, 2025Updated 5 months ago
- ☆23May 31, 2022Updated 3 years ago