masato-ogishi / RepitopeLinks
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
☆24Updated last year
Alternatives and similar repositories for Repitope
Users that are interested in Repitope are comparing it to the libraries listed below
Sorting:
- ☆38Updated last year
- PRedictor of IMmunogenic Epitopes☆23Updated last month
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- DRUGZ software☆23Updated 3 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆24Updated 6 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- Functional Embedding of Gene Signatures☆45Updated last year
- ☆29Updated 2 weeks ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Prize-Collecting Steiner Forests for Interactomes☆60Updated last year
- predicting peptide and TCR interaction☆20Updated 4 years ago
- R package for functionally scoring phosphorylation sites☆20Updated 5 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated this week
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated 2 years ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated this week
- MHC Class I and Class II neoantigen binding prediction☆30Updated 2 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆55Updated 2 weeks ago