Webserver and command line tool for annotating engineered plasmids
☆147Aug 24, 2026Updated last month
Alternatives and similar repositories for pLannotate
Users that are interested in pLannotate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Webserver and command line tool for annotating engineered plasmids☆17May 19, 2026Updated 4 months ago
- Teselagen Open Source modules☆106May 22, 2026Updated 4 months ago
- Nanopore Plasmid Sequencing☆34Oct 10, 2023Updated 2 years ago
- ☆43Dec 15, 2025Updated 9 months ago
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Plasmid exploration of bacterial genomes☆27Mar 2, 2022Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Sequencing analysis pipeline☆16Dec 12, 2025Updated 9 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated 2 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆110Jan 22, 2026Updated 8 months ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆16May 29, 2025Updated last year
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A versatile DNA sequence optimizer☆281Nov 5, 2025Updated 10 months ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆23Sep 30, 2022Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆67May 12, 2025Updated last year
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- Python library to visualize circular plasmid maps☆27Dec 12, 2021Updated 4 years ago
- 🎺 Plot DNA digestion band patterns with Python☆20May 12, 2025Updated last year
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆230Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆32Apr 9, 2025Updated last year
- Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis☆22Jul 27, 2026Updated last month
- a JavaScript DNA, RNA, and protein sequence viewer☆330Updated this week
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 9 months ago
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- WtP: Phage identification via nextflow and docker or singularity☆107Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A route planner for DNA assembly☆38May 12, 2025Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates