Edinburgh-Genome-Foundry / DnaCauldronLinks
Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
☆64Updated 7 months ago
Alternatives and similar repositories for DnaCauldron
Users that are interested in DnaCauldron are comparing it to the libraries listed below
Sorting:
- A route planner for DNA assembly☆36Updated 7 months ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 6 months ago
- nucleic acid folding☆108Updated 4 months ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆59Updated 10 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆211Updated last week
- A PCR primer tool for DNA assembly flows☆34Updated last year
- General low-level API☆50Updated 3 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- Codon usage tables in code-friendly format + Python bindings☆41Updated 7 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last week
- Enzyme-constrained genome-scale models in python☆30Updated 2 years ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆45Updated 5 years ago
- Webserver and command line tool for annotating engineered plasmids☆135Updated 5 months ago
- Find common blocks and differences between DNA sequences☆42Updated last month
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆45Updated 3 weeks ago
- A Python framework for structural systems biology☆110Updated 5 years ago
- Read DNA sequences from colourful Microsoft Word documents☆34Updated 7 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆170Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 8 months ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated last year
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15Updated 6 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 8 months ago
- A scalable cloning system☆25Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Tool for deep mutational scanning experiments.☆56Updated 9 months ago
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- DNA overhang misannealing data for Python☆13Updated 7 months ago