Edinburgh-Genome-Foundry / DnaCauldronLinks
Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
☆61Updated last month
Alternatives and similar repositories for DnaCauldron
Users that are interested in DnaCauldron are comparing it to the libraries listed below
Sorting:
- A route planner for DNA assembly☆35Updated last month
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 3 weeks ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆133Updated 6 months ago
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago
- A Python framework for structural systems biology☆108Updated 4 years ago
- An Open-Source web application to plan and document cloning and genome engineering☆29Updated this week
- Models, design algorithms, and other software related to Salis lab publications☆34Updated 7 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆73Updated 2 weeks ago
- nucleic acid folding☆94Updated 10 months ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆56Updated 9 years ago
- Codon usage tables in code-friendly format + Python bindings☆37Updated last month
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 2 months ago
- Short overhangs design for DNA assembly☆14Updated 3 years ago
- a DNA assembly library☆22Updated last year
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Protein 3D structure prediction pipeline☆81Updated 2 weeks ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆42Updated 4 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- a pipeline to build similarity maps of protein space☆35Updated 6 months ago
- Webserver and command line tool for annotating engineered plasmids☆122Updated 2 weeks ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆181Updated this week
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- Degenerate Codon Design☆13Updated 5 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆44Updated last month
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 2 months ago
- Fast protein structure searching or your money back☆103Updated 2 months ago
- A python wrapper for the benchling api☆50Updated 4 years ago
- Example usage of the Benchling API: https://docs.benchling.com/☆33Updated 2 weeks ago