Edinburgh-Genome-Foundry / DnaCauldronLinks
Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
β61Updated 2 months ago
Alternatives and similar repositories for DnaCauldron
Users that are interested in DnaCauldron are comparing it to the libraries listed below
Sorting:
- A route planner for DNA assemblyβ36Updated 2 months ago
- π€ Python biolab automation library: parsers, report generators, picklist simulators, and moreβ45Updated last month
- nucleic acid foldingβ94Updated 11 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layoutsβ74Updated last month
- A PCR primer tool for DNA assembly flowsβ33Updated last year
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloningβ¦β181Updated last week
- Codon usage tables in code-friendly format + Python bindingsβ37Updated 2 months ago
- Enzyme-constrained genome-scale models in pythonβ28Updated last year
- General low-level APIβ50Updated 2 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desigβ¦β57Updated 9 years ago
- A Python framework for structural systems biologyβ109Updated 4 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysisβ135Updated 7 months ago
- D3.js based visualizations of cobrapy metabolic modelsβ45Updated 5 years ago
- Webserver and command line tool for annotating engineered plasmidsβ123Updated this week
- π¨ Python library to plot multi-part genetic constructsβ25Updated 3 months ago
- Python Implementation of Codon Adaption Indexβ37Updated 2 years ago
- Read DNA sequences from colourful Microsoft Word documentsβ32Updated 2 months ago
- Toolbox for including enzyme constraints on a genome-scale model.β76Updated 2 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)β35Updated 6 years ago
- Comprehensive Python client for the Uniprot REST APIβ50Updated 3 weeks ago
- Models, design algorithms, and other software related to Salis lab publicationsβ34Updated 8 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysisβ40Updated 2 weeks ago
- Find common blocks and differences between DNA sequencesβ42Updated 3 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)β158Updated 9 months ago
- A Python package for mapping sequence aligned data onto protein structuresβ35Updated 4 years ago
- π« Computer-aided DNA assembly validation and identification from restriction digests.β16Updated last month
- A high-fidelity E. coli RNA-seq compendiumβ32Updated 4 years ago
- Protein structure comparison tools such as SSAP and SNAPβ64Updated last year
- BGC Detection and Classification Using Deep Learningβ146Updated last year
- Protein 3D structure prediction pipelineβ82Updated last week