Edinburgh-Genome-Foundry / DnaCauldron
Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
β54Updated last year
Alternatives and similar repositories for DnaCauldron:
Users that are interested in DnaCauldron are comparing it to the libraries listed below
- A route planner for DNA assemblyβ31Updated last year
- π€ Python biolab automation library: parsers, report generators, picklist simulators, and moreβ42Updated 4 months ago
- Find common blocks and differences between DNA sequencesβ40Updated 2 years ago
- Models, design algorithms, and other software related to Salis lab publicationsβ28Updated 3 months ago
- Enzyme-constrained genome-scale models in pythonβ25Updated last year
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desigβ¦β53Updated 9 years ago
- Codon usage tables in code-friendly format + Python bindingsβ35Updated 2 weeks ago
- A PCR primer tool for DNA assembly flowsβ30Updated 9 months ago
- DNA overhang misannealing data for Pythonβ13Updated 2 years ago
- πΊ Plot DNA digestion band patterns with Pythonβ19Updated 2 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, β¦β40Updated last month
- A Python framework for structural systems biologyβ107Updated 4 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApyβ41Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysisβ115Updated 2 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)β36Updated 6 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layoutsβ68Updated this week
- Read DNA sequences from colourful Microsoft Word documentsβ32Updated last year
- π¨ Python library to plot multi-part genetic constructsβ25Updated last year
- β24Updated 3 weeks ago
- Degenerate Codon Designβ13Updated 5 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.β33Updated 2 years ago
- General low-level APIβ49Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental dataβ27Updated last year
- nucleic acid foldingβ87Updated 6 months ago
- An RNA manipulation library.β54Updated 11 months ago
- Software for predicting translation initiation rates in bacteriaβ20Updated 2 months ago
- A Python package for mapping sequence aligned data onto protein structuresβ34Updated 3 years ago
- π« Computer-aided DNA assembly validation and identification from restriction digests.β15Updated 2 years ago
- A high-fidelity E. coli RNA-seq compendiumβ33Updated 3 years ago
- MMseqs2 app to run on your workstation or serversβ70Updated 3 weeks ago