Lattice-Automation / seqviz

Related projects: ⓘ

• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆205Updated this week
• BjornFJohansson / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆163Updated this week
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆221Updated last month
• TeselaGen / openVectorEditor
  DEPRECATED - Teselagen's Open Source Vector/Plasmid Editor Component
  ☆200Updated last year
• ebi-webcomponents / nightingale
  Data visualisation web components for the life sciences.
  ☆118Updated last week
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆517Updated 3 months ago
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆268Updated this week
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆188Updated last month
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆94Updated 3 weeks ago
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆398Updated this week
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆364Updated 9 months ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆157Updated 2 weeks ago
• Edinburgh-Genome-Foundry / DnaFeaturesViewer
  Python library to plot DNA sequence features (e.g. from Genbank files)
  ☆584Updated last month
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆191Updated last week
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆178Updated last year
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆290Updated this week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆557Updated 4 months ago
• antismash / antismash
  antiSMASH
  ☆178Updated 3 weeks ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆541Updated last month
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆95Updated this week
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆755Updated 2 months ago
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆269Updated last week
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆126Updated 8 months ago
• ncbi / amr
  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…
  ☆264Updated last week
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆82Updated last month
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆101Updated 5 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆348Updated 4 months ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆149Updated 2 weeks ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆317Updated 3 weeks ago
• calipho-sib / sequence-viewer
  neXtProt protein sequence viewer (javascript) - From SIB CALIPHO group; neXtProt project
  ☆50Updated last year