mckennalab / Circuitseq
Nanopore Plasmid Sequencing
☆30Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Circuitseq
- Python library to visualize circular plasmid maps☆22Updated 2 years ago
- Fast and flexible ORF finder☆60Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆30Updated 2 months ago
- ☆116Updated 2 months ago
- sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.☆29Updated 5 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆52Updated 3 months ago
- Parse GFF3 into Pandas dataframes☆26Updated 8 months ago
- Making bioinformatics fun again☆60Updated 5 months ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆55Updated 4 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆49Updated last year
- Merging paired-end reads and removing adapters☆45Updated 4 years ago
- Webserver and command line tool for annotating engineered plasmids☆106Updated 6 months ago
- ☆24Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆75Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- Bioinformatics tool for Locus Visualisation☆70Updated this week
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆46Updated last week
- Similarity networks of biosynthetic gene clusters☆69Updated this week
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆35Updated last week
- A Pure-Python parser of HMMER3 output☆17Updated 3 weeks ago
- A genome browser in your Jupyter notebook☆26Updated 7 months ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆22Updated last year
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- ☆35Updated last year
- iCodon customizes gene expression based on the codon composition☆13Updated last year
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆42Updated last month
- Protein Alignment and Detection Interface☆60Updated 7 months ago