Edinburgh-Genome-Foundry / genome_collectorView external linksLinks
Easily download genomes and build BLAST/Bowtie indexes in Python
☆22Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for genome_collector
Users that are interested in genome_collector are comparing it to the libraries listed below
Sorting:
- Batch domestication of genetic parts with Python☆16May 12, 2025Updated 9 months ago
- Read DNA sequences from colourful Microsoft Word documents☆34May 12, 2025Updated 9 months ago
- 🎺 Plot DNA digestion band patterns with Python☆20May 12, 2025Updated 9 months ago
- A route planner for DNA assembly☆36May 12, 2025Updated 9 months ago
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 3 years ago
- Draw genetic elements with HTML & CSS☆16Feb 8, 2017Updated 9 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated 9 months ago
- 🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software☆20Dec 10, 2022Updated 3 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆65May 12, 2025Updated 9 months ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15May 29, 2025Updated 8 months ago
- Predict DNA assembly clone validity rates - powered by Kappa☆10Jul 24, 2020Updated 5 years ago
- DNA overhang misannealing data for Python☆13May 15, 2025Updated 9 months ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆46May 29, 2025Updated 8 months ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Apr 9, 2025Updated 10 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Apr 9, 2025Updated 10 months ago
- **PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. Set up Leaf LIMS on your own system.☆31May 22, 2018Updated 7 years ago
- Find common blocks and differences between DNA sequences☆42Nov 5, 2025Updated 3 months ago
- A Python molecular biology CAD tool with a dead-simple user interface☆12Dec 8, 2022Updated 3 years ago
- A versatile DNA sequence optimizer☆262Nov 5, 2025Updated 3 months ago
- Computer-Aided Process Planner (CAPP) for Synthetic Biology Research☆11Jun 1, 2021Updated 4 years ago
- a DNA assembly library☆23Aug 13, 2025Updated 6 months ago
- Generate identicons for DNA sequences with Python☆38May 8, 2025Updated 9 months ago
- The friendly Computational App Boilerplate. Django + Vue.JS + Redis queues + NginX☆22Jun 10, 2021Updated 4 years ago
- Web based Registry platform for managing synthetic biological parts☆42May 16, 2024Updated last year
- Codon usage tables in code-friendly format + Python bindings☆42May 9, 2025Updated 9 months ago
- ☆26Dec 2, 2025Updated 2 months ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆680Jul 2, 2025Updated 7 months ago
- General low-level API☆50Jul 18, 2022Updated 3 years ago
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆13Jan 9, 2026Updated last month
- Modular cloning simulation with the MoClo framework in Python☆12May 3, 2022Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆26Jul 13, 2023Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆34Oct 25, 2023Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- A python wrapper for the benchling api☆50Sep 11, 2020Updated 5 years ago
- Ginkgo SARS-CoV-2 synthesis efforts: overviews and data☆13Jun 7, 2020Updated 5 years ago
- 🖨️ Print pictures with living micro-organisms!☆14Apr 9, 2025Updated 10 months ago
- A library to encode text as DNA and decode DNA to text.☆13Nov 21, 2022Updated 3 years ago
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year