ponnhide / plasmidviewer

Related projects ⓘ

Alternatives and complementary repositories for plasmidviewer

• BackofenLab / CRISPRidentify
  ☆25Updated last week
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆74Updated 2 weeks ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆52Updated 3 months ago
• KatyBrown / CIAlign
  ☆117Updated 2 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆49Updated last year
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆30Updated last year
• kelwyres / Bactabolize
  ☆35Updated 2 weeks ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆30Updated 2 months ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆67Updated 2 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆51Updated last week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 7 months ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆42Updated 2 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆37Updated 7 months ago
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆70Updated last month
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆108Updated 7 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆84Updated last year
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 3 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆53Updated 4 months ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆17Updated last month
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆93Updated 9 months ago
• aditya-88 / ASAP
  Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.
  ☆22Updated last year
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 2 years ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆87Updated last month
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆28Updated 10 months ago
• epi2me-labs / wf-clone-validation
  ☆25Updated this week
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆16Updated 2 weeks ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆62Updated 2 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆40Updated last week