Alternatives and similar repositories for plasmidviewer

Users that are interested in plasmidviewer are comparing it to the libraries listed below

• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆34Updated 2 years ago
• KatyBrown / CIAlign
  ☆133Updated last year
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆60Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆63Updated last year
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆135Updated 5 months ago
• stuckyb / seqtrace
  User-friendly software for viewing and processing Sanger DNA sequencing trace files.
  ☆32Updated 7 years ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 2 years ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated 2 weeks ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆106Updated last year
• ponnhide / PySanger
  A Python module to analyze Sanger sequencing results.
  ☆24Updated 2 years ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 3 years ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆128Updated last month
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated 2 weeks ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆140Updated this week
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆154Updated 2 months ago
• BackofenLab / CRISPRidentify
  ☆31Updated last year
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆159Updated last week
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆121Updated 3 weeks ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆63Updated 5 years ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆75Updated 8 months ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆127Updated 4 months ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆52Updated 2 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆52Updated last month
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆119Updated 7 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆61Updated 9 months ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 7 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆87Updated 3 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆92Updated 4 months ago