Analyse Nucleic Acids Structure and Simulations with baRNAba
☆47Mar 20, 2024Updated last year
Alternatives and similar repositories for barnaba
Users that are interested in barnaba are comparing it to the libraries listed below
Sorting:
- A Python library containing RNA-related bioinformatics functions and classes.☆20Feb 23, 2026Updated last week
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 2 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆13Oct 19, 2022Updated 3 years ago
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- Force Fields☆14Oct 25, 2022Updated 3 years ago
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆30Jun 3, 2022Updated 3 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆19Jul 11, 2024Updated last year
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.☆27Apr 15, 2025Updated 10 months ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆24Dec 3, 2024Updated last year
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures☆19Updated this week
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆16May 6, 2025Updated 9 months ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- Integrating Molecular Simulation and Experimental Data☆26Sep 19, 2021Updated 4 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆19Apr 3, 2021Updated 4 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- ☆13Dec 1, 2025Updated 3 months ago
- Implementation of corrections for diffusion coefficients in membrane simulations.☆10Aug 2, 2022Updated 3 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Updated this week
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆11Apr 7, 2023Updated 2 years ago
- ☆13Oct 19, 2023Updated 2 years ago
- ☆13Oct 25, 2025Updated 4 months ago
- Coarse-graining potentials from atomistic references made easy☆26Sep 27, 2021Updated 4 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- ☆12Feb 7, 2023Updated 3 years ago
- Simulation code for the prediction of RNA structures.☆13Jan 21, 2025Updated last year
- RiboNucleic Acid (RNA) Language Model☆157Oct 3, 2025Updated 4 months ago
- An RNA manipulation library.☆56Feb 16, 2024Updated 2 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 4 years ago
- ☆15Apr 7, 2022Updated 3 years ago
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆12Jun 22, 2022Updated 3 years ago
- Examples and data for performing path similarity analysis (PSA).☆17Oct 23, 2015Updated 10 years ago
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆39Updated this week
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆32Oct 14, 2024Updated last year
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated 10 months ago