kiharalab / NuFoldLinks
NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
☆46Updated 3 months ago
Alternatives and similar repositories for NuFold
Users that are interested in NuFold are comparing it to the libraries listed below
Sorting:
- Active Learning-Assisted Directed Evolution for Protein Engineering☆67Updated 10 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆39Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆41Updated 4 months ago
- Machine learning prediction of enzyme optimum pH☆46Updated 5 months ago
- ☆71Updated 6 months ago
- Extension of ThermoMPNN for double mutant predictions☆43Updated last week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆64Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆55Updated 4 months ago
- ☆20Updated last year
- Kuhlman Lab Installation of AlphaFold3☆36Updated 2 weeks ago
- The official codebase of peptidy, a peptide processing tool for machine learning.☆34Updated 5 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆39Updated 10 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆55Updated 3 weeks ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 3 months ago
- ☆47Updated 9 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- AlphaFold-initiated replica exchange protein docking☆84Updated 4 months ago
- Ultra-fast in-silico structure mutation☆34Updated 6 months ago
- ☆53Updated 2 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆40Updated 6 months ago
- Efficient manipulation of protein structures in Python☆58Updated 2 weeks ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆28Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆33Updated last year
- ☆88Updated this week
- ☆36Updated last year
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆40Updated 7 months ago