NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
☆55Oct 31, 2025Updated 11 months ago
Alternatives and similar repositories for NuFold
Users that are interested in NuFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆249May 29, 2025Updated last year
- ARES implement in PyTorch☆17Feb 27, 2024Updated 2 years ago
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Jul 14, 2026Updated 3 months ago
- ☆15Jan 27, 2025Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆35Aug 23, 2024Updated 2 years ago
- ☆24Oct 1, 2026Updated 2 weeks ago
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆14Jul 8, 2025Updated last year
- BioLiP2 database curation and web interface☆36Jun 19, 2025Updated last year
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention☆41Updated this week
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated last year
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- DSDPFlex: Flexible-Receptor Docking with GPU Acceleration☆26Dec 24, 2025Updated 9 months ago
- Code associated with the publication 'Generative and predictive neural networks for the design of functional RNA molecules'☆16Apr 8, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- A Light-Weight And Interpretable Molecular Docking Model☆26Oct 23, 2024Updated last year
- ☆12May 3, 2025Updated last year
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆99Jun 5, 2026Updated 4 months ago
- ☆37Jan 14, 2025Updated last year
- Weighted Ensemble Data Analysis and Plotting☆27Jul 17, 2026Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆42Oct 6, 2026Updated last week
- ☆14May 18, 2025Updated last year
- Interpretable Enzyme Function Prediction via Residue-Level Detection☆14Mar 9, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computational Chemistry Workflows☆57Jul 19, 2022Updated 4 years ago
- Scaffold decoration and fragment linking with chemical language models and RL☆28Mar 24, 2025Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆392May 27, 2025Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- scripts to find PBD structures for cancer driver proteins☆31Feb 27, 2026Updated 7 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆74Aug 11, 2026Updated 2 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Aug 29, 2026Updated last month
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- Code for deep learning guided design of dynamic proteins☆38Jul 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- ☆53Jun 17, 2026Updated 4 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆71May 8, 2026Updated 5 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆33Jan 17, 2023Updated 3 years ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Official code repository for the paper Molecule Generation with Fragment Retrieval Augmentation (NeurIPS 2024)☆31Apr 2, 2025Updated last year
- Interface-aware molecular generative framework for protein-protein interaction modulators☆21Dec 22, 2024Updated last year