Shujun-He / RibonanzaNetLinks
☆39Updated 8 months ago
Alternatives and similar repositories for RibonanzaNet
Users that are interested in RibonanzaNet are comparing it to the libraries listed below
Sorting:
- ☆34Updated 4 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆172Updated 2 months ago
- ☆21Updated last year
- RiboNucleic Acid (RNA) Language Model☆117Updated 2 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- ☆107Updated last year
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆104Updated 2 months ago
- ☆69Updated 3 months ago
- RNA Multiple Sequence Alignment☆43Updated 2 years ago
- MSA Transformer reproduction code☆84Updated 3 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆41Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆88Updated last week
- Primary RNA sequence model☆38Updated last year
- DeepGO with Fuzzy DL☆31Updated 2 years ago
- CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 speci…☆168Updated 2 weeks ago
- ☆36Updated 6 months ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆113Updated last year
- Protein language model trained on coding DNA☆47Updated 9 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆154Updated 3 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆138Updated last month
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆32Updated 4 years ago
- ☆35Updated last year
- ☆29Updated 2 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆153Updated last year
- ☆110Updated 3 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆49Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Bilingual Language Model for Protein Sequence and Structure☆262Updated 7 months ago