leeyang / DRfold2Links
☆42Updated 2 weeks ago
Alternatives and similar repositories for DRfold2
Users that are interested in DRfold2 are comparing it to the libraries listed below
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆146Updated last week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- Protein structure datasets for machine learning.☆116Updated 9 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆149Updated 9 months ago
- ☆23Updated last year
- ☆120Updated last week
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago
- Efficient implementatin of ESM family.☆80Updated 5 months ago
- ☆74Updated last year
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆25Updated last year
- LoRA for protein language models☆47Updated 2 years ago
- Directed evolution of proteins in sequence space with gradients☆94Updated 3 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆209Updated 8 months ago
- Contrastive learning harmonizing protein language models and natural language models☆39Updated last year
- ☆41Updated 2 years ago
- ☆109Updated 2 years ago
- ☆38Updated 2 years ago
- Dataset and package for working with protein-protein interactions in 3D☆104Updated 9 months ago
- ☆136Updated last year
- ☆36Updated last year
- ☆17Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated 3 weeks ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆104Updated 3 weeks ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆82Updated 8 months ago
- ☆84Updated 8 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Updated last year