Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention
☆37Apr 21, 2026Updated 3 months ago
Alternatives and similar repositories for trRosettaRNA2
Users that are interested in trRosettaRNA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation☆20Jan 19, 2026Updated 6 months ago
- ☆51Jan 28, 2026Updated 5 months ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆35Jun 11, 2026Updated last month
- ☆15Jun 25, 2026Updated 3 weeks ago
- ☆15Apr 9, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jan 27, 2025Updated last year
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆243May 29, 2025Updated last year
- ☆13May 26, 2022Updated 4 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)☆62Jan 5, 2026Updated 6 months ago
- Precision-Recall based assessment for CAFA☆16Dec 6, 2019Updated 6 years ago
- Accelerate Molecular Biology Research with Machine Learning☆56Jul 13, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 7 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 7 months ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆44May 3, 2026Updated 2 months ago
- A scoring function model based on 3D convolutional neural network for protein-ligand binding affinity prediction.☆17Oct 8, 2021Updated 4 years ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆52Oct 31, 2025Updated 8 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆13Mar 7, 2024Updated 2 years ago
- ☆47Jul 13, 2025Updated last year
- BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.☆34May 27, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Apr 14, 2024Updated 2 years ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆32Jun 3, 2022Updated 4 years ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆59Mar 20, 2024Updated 2 years ago
- HydraRNA is a full-length RNA language model.☆18Dec 15, 2025Updated 7 months ago
- Website Deployment for CRC User Manual☆13Updated this week
- RiboNucleic Acid (RNA) Language Model☆169May 4, 2026Updated 2 months ago
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆64Nov 8, 2024Updated last year
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆309Dec 16, 2025Updated 7 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆23Apr 22, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- ☆25Mar 9, 2026Updated 4 months ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- ☆38Nov 23, 2025Updated 7 months ago
- A novel method that quantitatively evaluates the impact of PLM in PLI predictions.☆12Sep 14, 2023Updated 2 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated last month
- Simulation code for the prediction of RNA structures.☆14Jan 21, 2025Updated last year