ml4bio / e2efoldLinks
pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
☆113Updated last year
Alternatives and similar repositories for e2efold
Users that are interested in e2efold are comparing it to the libraries listed below
Sorting:
- MSA Transformer reproduction code☆85Updated 3 years ago
- ☆107Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆144Updated 3 months ago
- ☆73Updated 5 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆103Updated 4 years ago
- RiboNucleic Acid (RNA) Language Model☆128Updated 4 months ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆65Updated last year
- ☆110Updated 3 years ago
- ☆59Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆119Updated 4 years ago
- AbLang: A language model for antibodies☆147Updated 2 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆154Updated 4 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated 3 weeks ago
- RNA Multiple Sequence Alignment☆45Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Implementation of ProteinBERT in Pytorch☆162Updated 4 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆106Updated last year
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆105Updated 2 weeks ago
- Generative Language Modeling for Antibody Design☆165Updated last year
- ☆130Updated 3 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆104Updated 4 months ago
- Protein design and variant prediction using autoregressive generative models☆112Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆69Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆98Updated 3 years ago
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆106Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆58Updated 3 weeks ago