ml4bio / e2efoldLinks
pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
☆113Updated last year
Alternatives and similar repositories for e2efold
Users that are interested in e2efold are comparing it to the libraries listed below
Sorting:
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆140Updated 2 months ago
- MSA Transformer reproduction code☆84Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- ☆69Updated 4 months ago
- RiboNucleic Acid (RNA) Language Model☆125Updated 3 months ago
- ☆107Updated last year
- ☆110Updated 3 years ago
- ☆59Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated last week
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated 11 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106Updated 3 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆119Updated 3 years ago
- Generative Language Modeling for Antibody Design☆162Updated 11 months ago
- ☆130Updated 3 years ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆65Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆148Updated 4 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆105Updated 11 months ago
- RNA Multiple Sequence Alignment☆44Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- AbLang: A language model for antibodies☆147Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆64Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- Implementation of ProteinBERT in Pytorch☆161Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆59Updated last week
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆106Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Protein design and variant prediction using autoregressive generative models☆111Updated last year