ml4bio / e2efoldLinks
pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
☆120Updated last year
Alternatives and similar repositories for e2efold
Users that are interested in e2efold are comparing it to the libraries listed below
Sorting:
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆154Updated this week
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- MSA Transformer reproduction code☆90Updated 4 years ago
- ☆77Updated 8 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆162Updated 2 years ago
- Implementation of ProteinBERT in Pytorch☆164Updated 4 years ago
- ☆109Updated 2 years ago
- ☆110Updated 3 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆67Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated last week
- Repository for publicly available deep learning models developed in Rosetta community☆121Updated 4 years ago
- AbLang: A language model for antibodies☆155Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆111Updated 2 months ago
- Generative Language Modeling for Antibody Design☆178Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 7 months ago
- RiboNucleic Acid (RNA) Language Model☆150Updated 3 months ago
- ☆130Updated 3 years ago
- ☆191Updated 3 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 4 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆130Updated 4 years ago
- Protein structure datasets for machine learning.☆114Updated 8 months ago
- ☆212Updated last year
- open source repository☆143Updated 2 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆161Updated 4 years ago
- ☆60Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆220Updated 4 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- ☆255Updated last year
- ☆121Updated last year