ml4bio / e2efoldLinks
pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
☆114Updated last year
Alternatives and similar repositories for e2efold
Users that are interested in e2efold are comparing it to the libraries listed below
Sorting:
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆131Updated 2 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 3 years ago
- ☆68Updated last month
- ☆130Updated 2 years ago
- Generative Language Modeling for Antibody Design☆149Updated 8 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆154Updated last year
- AbLang: A language model for antibodies☆140Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- MSA Transformer reproduction code☆83Updated 3 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆115Updated 3 years ago
- A generative latent variable model for biological sequence families.☆219Updated 3 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆102Updated 2 weeks ago
- trRosetta for protein design☆179Updated 4 years ago
- Unconstrained lattice antibody-antigen bindings generator☆109Updated 11 months ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆101Updated 2 years ago
- ☆108Updated 10 months ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆62Updated 10 months ago
- open source repository☆137Updated last year
- ☆247Updated 10 months ago
- ☆58Updated 2 years ago
- ☆187Updated 8 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆99Updated 8 months ago
- ☆126Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆146Updated 4 years ago
- ☆106Updated last year
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆125Updated 3 years ago
- RiboNucleic Acid (RNA) Language Model☆102Updated 2 weeks ago
- ☆194Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆100Updated 8 months ago
- Implementation of ProteinBERT in Pytorch☆158Updated 3 years ago