ml4bio / e2efold
pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
☆109Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for e2efold
- ☆126Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆115Updated last month
- ☆59Updated 11 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆97Updated 3 years ago
- MSA Transformer reproduction code☆70Updated 3 years ago
- Generative Language Modeling for Antibody Design☆130Updated last month
- AbLang: A language model for antibodies☆128Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆139Updated last year
- ☆159Updated 2 months ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆129Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆94Updated last month
- ☆104Updated 2 years ago
- ☆101Updated 11 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆60Updated last month
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆96Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆281Updated last year
- ☆66Updated last year
- Code for Fold2Seq paper from ICML 2021☆49Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆87Updated 2 months ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆50Updated 4 months ago
- Protein structure datasets for machine learning.☆102Updated 4 months ago
- open source repository☆125Updated 11 months ago
- A generative latent variable model for biological sequence families.☆210Updated 2 years ago
- ☆195Updated last year
- An evolutionary context-integrated deep learning framework for protein engineering☆63Updated 2 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆106Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆210Updated 7 months ago
- ☆193Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆101Updated 4 months ago