Code of a structure-enhanced RNA language model named ERNIE-RNA
☆41Nov 19, 2025Updated 5 months ago
Alternatives and similar repositories for ERNIE-RNA
Users that are interested in ERNIE-RNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jun 22, 2024Updated last year
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆362May 27, 2025Updated 10 months ago
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- ☆11Sep 3, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- Primary RNA sequence model☆43May 20, 2024Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 3 years ago
- ☆13Oct 19, 2023Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆161Oct 3, 2025Updated 6 months ago
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆38Dec 17, 2025Updated 4 months ago
- ☆37Jan 14, 2025Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆40Apr 8, 2026Updated last week
- Protein structure descriptors and alignment based on 3D Zernike moments.☆39Apr 10, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid structure-based virtual screening for RNA targets.☆27Mar 6, 2026Updated last month
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆54Dec 14, 2025Updated 4 months ago
- ☆95Oct 9, 2024Updated last year
- A tool for the analysis of pathways sampled in molecular dynamics simulations based on Self-Organizing Maps (SOM)☆10Jan 26, 2022Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated 2 weeks ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆41Oct 1, 2021Updated 4 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- The code for UniPMT☆18Mar 16, 2025Updated last year
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆20Nov 22, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆73Apr 28, 2023Updated 2 years ago
- ☆19Oct 2, 2024Updated last year
- End-to-end pipeline for PPIFlow☆23Feb 17, 2026Updated 2 months ago
- Package to extend Airflow functionality with CWL v1.0 support☆12Jun 12, 2019Updated 6 years ago
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆16Nov 11, 2022Updated 3 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- ☆11Aug 2, 2024Updated last year
- ☆11Mar 11, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Real time monitor for snakemake☆17Apr 12, 2026Updated last week
- ☆14Dec 10, 2018Updated 7 years ago
- Implementation of the latest developments in NLP ranging from ensemble learning to BERT. Pipelines are in Tensorflow and Pytorch☆13Oct 30, 2020Updated 5 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated last year
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago