Alternatives and similar repositories for RNAformer

Users that are interested in RNAformer are comparing it to the libraries listed below

• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆78Updated last year
• programmablebio / ptm-mamba
  ☆84Updated 6 months ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆40Updated 5 months ago
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆51Updated last year
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆97Updated 11 months ago
• cgoliver / rnaglib
  Toolkit for structure-based deep learning on RNA.
  ☆44Updated last month
• ZhonghuiGu / HEAL
  ☆56Updated last year
• smiles724 / GNN-Bottleneck
  ☆41Updated 6 months ago
• LirongWu / Prompt-DDG
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…
  ☆44Updated last year
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆50Updated 3 months ago
• zhengkangjie / ESM-AA
  ☆75Updated 10 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆37Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆122Updated 9 months ago
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆68Updated last year
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆99Updated 2 years ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆89Updated 6 months ago
• wukevin / proteinclip
  Contrastive learning harmonizing protein language models and natural language models
  ☆38Updated last year
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆78Updated 6 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆40Updated last year
• biomed-AI / GraphPPIS
  ☆54Updated last year
• aws-samples / lm-gvp
  LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
  ☆65Updated last year
• leeyang / DRfold
  ☆42Updated 2 years ago
• phermosilla / IEConv_proteins
  Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
  ☆48Updated 3 years ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆78Updated 3 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆80Updated last year
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated this week
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆46Updated last year
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆59Updated last year
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated 2 years ago