automl / RNAformerLinks
Scalable Deep Learning for RNA Secondary Structure Prediction
☆37Updated last year
Alternatives and similar repositories for RNAformer
Users that are interested in RNAformer are comparing it to the libraries listed below
Sorting:
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆69Updated last year
- The first large protein language model trained follows structure instructions.☆84Updated 4 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆93Updated 8 months ago
- ☆79Updated 3 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Updated 10 months ago
- ☆76Updated 7 months ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆68Updated 2 months ago
- Official repository of ReactZyme☆36Updated 11 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆118Updated 6 months ago
- ☆40Updated 3 months ago
- Official implementation of "Learning the language of protein structures"☆39Updated 3 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆118Updated 6 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆105Updated last month
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆73Updated 4 months ago
- Official Implementation of IgGM☆82Updated 3 weeks ago
- Efficient implementatin of ESM family.☆72Updated last week
- Toolkit for structure-based deep learning on RNA.☆40Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆41Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆61Updated last year
- ☆52Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- MSA Transformer reproduction code☆84Updated 3 years ago
- ☆54Updated last year
- Official repository of EnzymeFlow☆94Updated 9 months ago
- Graph Network for protein-protein interface☆120Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆75Updated 7 months ago