automl / RNAformerLinks
Scalable Deep Learning for RNA Secondary Structure Prediction
☆36Updated 11 months ago
Alternatives and similar repositories for RNAformer
Users that are interested in RNAformer are comparing it to the libraries listed below
Sorting:
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆62Updated 10 months ago
- ☆71Updated 3 weeks ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆60Updated 4 months ago
- RNA Multiple Sequence Alignment☆42Updated last year
- Protein language model trained on coding DNA☆47Updated 8 months ago
- Efficient implementatin of ESM family.☆58Updated 5 months ago
- Contrastive learning harmonizing protein language models and natural language models☆32Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆86Updated 5 months ago
- ☆36Updated 5 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆56Updated 6 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆49Updated 7 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆114Updated 3 months ago
- Official implementation of "Learning the language of protein structures"☆33Updated last week
- Official repository of ReactZyme☆33Updated 8 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆41Updated last month
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆44Updated 2 months ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆63Updated 11 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated last month
- Structure-Informed Protein Language Model☆34Updated last year
- ☆73Updated 4 months ago
- ☆46Updated last year
- ☆13Updated 2 years ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆97Updated last year
- ☆57Updated 8 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆30Updated 5 months ago
- The first large protein language model trained follows structure instructions.☆81Updated last month
- Various Ideas for Protein Masked LM with ESMFold/ESM-2☆15Updated last year
- RiboNucleic Acid (RNA) Language Model☆109Updated 3 weeks ago
- ☆35Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆38Updated 6 months ago