Alternatives and similar repositories for mxfold2

Users that are interested in mxfold2 are comparing it to the libraries listed below

• uci-cbcl / UFold
  ☆69Updated 2 months ago
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆104Updated last month
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆151Updated 2 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆123Updated 8 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆79Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆210Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆256Updated 6 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆100Updated last week
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 4 years ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆101Updated 3 years ago
• ml4bio / e2efold
  pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
  ☆114Updated last year
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆177Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆224Updated 3 years ago
• a96123155 / UTR-LM
  ☆89Updated 9 months ago
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆48Updated last year
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆272Updated 4 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆152Updated last year
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆117Updated 3 years ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆112Updated last month
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆171Updated last year
• aqlaboratory / rgn2
  ☆107Updated last year
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆163Updated 10 months ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆130Updated last year
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated 11 months ago
• Biomatter-Designs / ProteinGAN
  ☆192Updated 3 years ago
• tttianhao / CLEAN
  CLEAN: a contrastive learning model for high-quality functional prediction of proteins
  ☆274Updated 3 months ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆174Updated last week
• microsoft / protein-sequence-models
  ☆248Updated 11 months ago
• LinearDesignSoftware / LinearDesign
  The LinearDesign mRNA design software.
  ☆187Updated last year