mxfold / mxfold2
MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
☆115Updated last month
Related projects ⓘ
Alternatives and complementary repositories for mxfold2
- ☆59Updated 11 months ago
- Bilingual Language Model for Protein Sequence and Structure☆185Updated last month
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆137Updated 11 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆96Updated 2 years ago
- Install alphafold on the local machine, get out of docker.☆100Updated 3 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆107Updated 3 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆110Updated last week
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆147Updated 9 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆97Updated 3 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆109Updated 7 months ago
- Efficient evolution from protein language models☆177Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆148Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆87Updated 2 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆122Updated 3 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆242Updated last week
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆43Updated last year
- ☆101Updated 11 months ago
- Compressing protein structures effectively with torsion angles☆162Updated 3 months ago
- ☆83Updated 4 months ago
- trRosetta for protein design☆172Updated 3 years ago
- Antibody Numbering and Antigen Receptor ClassIfication☆188Updated 6 months ago
- ☆46Updated last year
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆150Updated 2 months ago
- Neural Networks for Protein Sequence Alignment☆114Updated 2 weeks ago
- Protein folding in Pymol☆95Updated 3 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆84Updated 2 months ago
- AbLang: A language model for antibodies☆128Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆106Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆60Updated this week
- Code for ColabDock paper☆127Updated last month