MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
☆158Mar 9, 2026Updated last week
Alternatives and similar repositories for mxfold2
Users that are interested in mxfold2 are comparing it to the libraries listed below
Sorting:
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated last year
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 2 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 9 months ago
- ☆79Apr 22, 2025Updated 10 months ago
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆189Apr 4, 2024Updated last year
- The ViennaRNA Package☆389Feb 24, 2026Updated 3 weeks ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 4 years ago
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆177Nov 24, 2023Updated 2 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated last year
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆34May 24, 2024Updated last year
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆20Mar 17, 2024Updated 2 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆358May 27, 2025Updated 9 months ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- ☆12Feb 13, 2019Updated 7 years ago
- RNA secondary structure prediction tool☆20Feb 18, 2026Updated last month
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Nov 17, 2024Updated last year
- Scalable Deep Learning for RNA Secondary Structure Prediction☆40Sep 23, 2025Updated 5 months ago
- Create force-directed graphs of RNA secondary structures.☆110Jun 6, 2020Updated 5 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- Draw RNA secondary structures in python.☆51Jun 24, 2025Updated 8 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Nov 11, 2022Updated 3 years ago
- ☆12Feb 7, 2023Updated 3 years ago
- ☆10Mar 6, 2025Updated last year
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated 11 months ago
- ☆36Jan 14, 2025Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆376Jun 3, 2024Updated last year
- An RNA manipulation library.☆56Feb 16, 2024Updated 2 years ago
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Mar 7, 2022Updated 4 years ago
- ☆21Dec 20, 2024Updated last year
- RNA Structural Covariation Above Phylogenetic Expectation☆18Dec 12, 2025Updated 3 months ago
- RNA Multiple Sequence Alignment☆50Jul 20, 2023Updated 2 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆175Feb 4, 2026Updated last month
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆63Feb 12, 2026Updated last month
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆27Jan 27, 2023Updated 3 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆66Jul 17, 2024Updated last year
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated last year