mxfold / mxfold2
MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
☆121Updated 3 months ago
Alternatives and similar repositories for mxfold2:
Users that are interested in mxfold2 are comparing it to the libraries listed below
- ☆62Updated last year
- Install alphafold on the local machine, get out of docker.☆101Updated 3 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆97Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆219Updated last month
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆119Updated 2 weeks ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆144Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆46Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆110Updated 10 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆122Updated 3 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆255Updated 2 months ago
- Neural Networks for Protein Sequence Alignment☆117Updated 3 months ago
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆158Updated 11 months ago
- ☆51Updated last year
- Protein design and variant prediction using autoregressive generative models☆95Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆111Updated 3 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆93Updated 3 weeks ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆157Updated 2 years ago
- Efficient evolution from protein language models☆188Updated last year
- Compressing protein structures effectively with torsion angles☆164Updated 6 months ago
- Protein folding in Pymol☆104Updated last month
- Unconstrained lattice antibody-antigen bindings generator☆103Updated 7 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆100Updated 5 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆79Updated 2 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆85Updated 6 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆107Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆69Updated 10 months ago
- ☆28Updated last year
- trRosetta for protein design☆177Updated 3 years ago
- Fast protein structure searching or your money back☆95Updated last week