tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. This is a script in R to simulate the cancer cell evolution in the framework of Hallmarks model proposed by prof. Mamoru Kato.
☆13Dec 11, 2023Updated 2 years ago
Alternatives and similar repositories for Cancer_cell_evolution
Users that are interested in Cancer_cell_evolution are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- bioinformatics R test code☆14Feb 1, 2026Updated last month
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- Run homebrew commands while simultanously logging to a file☆16Aug 12, 2024Updated last year
- ☆48Jan 7, 2025Updated last year
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- ☆20May 1, 2023Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated 11 months ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Spatial Simulation of Tumor Growth☆14Feb 24, 2017Updated 9 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- Competing Genetic Algorithm to find profitable Trading Strategies on a financial market☆13May 29, 2019Updated 6 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- ☆15Jun 2, 2021Updated 4 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 4 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Jul 23, 2020Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- A lightweight Alpine docker image that runs openvscode-server (vscode accessible by web)☆19Jun 17, 2024Updated last year
- A CLI tool that helps AI researchers share datasets responsibly.☆21Sep 15, 2025Updated 6 months ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 11 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆14Jun 24, 2024Updated last year
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Nov 9, 2016Updated 9 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 7 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆38Aug 19, 2024Updated last year
- Exome Copy Number Variation Polisher via Deep Learning☆18Jun 1, 2020Updated 5 years ago