Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
☆17Dec 12, 2022Updated 3 years ago
Alternatives and similar repositories for PHAT
Users that are interested in PHAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array☆10Mar 7, 2024Updated 2 years ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- ☆12Sep 11, 2025Updated 8 months ago
- C implementation of the Louvain method for community detection in graphs☆11Mar 10, 2020Updated 6 years ago
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Jan 12, 2026Updated 4 months ago
- Multiple Genome Viewer☆12Sep 16, 2025Updated 8 months ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Updated this week
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- 📈 DNA Sequence Visualization for Humans☆42Jul 10, 2021Updated 4 years ago
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated 11 months ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆47Jun 26, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read CRAM v3 and v2 in node or in the browser☆18May 19, 2026Updated last week
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 months ago
- GeneWarrior is an online DNA and protein sequence manipulation tool☆18May 12, 2026Updated 2 weeks ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- Toolbox package for organizing and working with TCGA data☆29Updated this week
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Work from the book 'Advanced Python for Biologists'☆14Sep 12, 2018Updated 7 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Feb 2, 2021Updated 5 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆214May 14, 2020Updated 6 years ago
- 统计学习导论基于R应用笔记☆13Aug 9, 2020Updated 5 years ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签，训练神经网络模型；训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 3 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 3 years ago